PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10024652m
Common NameCARUB_v10024652mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family M-type_MADS
Protein Properties Length: 104aa    MW: 12265.3 Da    PI: 10.5454
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10024652mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.68e-192270149
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     krie +  r+  +skR+ng+lKKA+E+ vLC++++a+iifs+++k   y
  Carubv10024652m 22 KRIECSKERSDKYSKRKNGLLKKAQEIEVLCNIDIALIIFSPKNKANIY 70
                     799****************************************996655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-231473IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.3291474IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.26E-241592IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-171636IPR002100Transcription factor, MADS-box
PfamPF003194.3E-172367IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-173651IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-175172IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MKRDQQKTTT TERMGRKKID LKRIECSKER SDKYSKRKNG LLKKAQEIEV LCNIDIALII  60
FSPKNKANIY HSGSFGKILE KFCKVSLQER EDRFDRSRFY VIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-141486173MEF2 CHIMERA
6byy_B3e-141486173MEF2 CHIMERA
6byy_C3e-141486173MEF2 CHIMERA
6byy_D3e-141486173MEF2 CHIMERA
6bz1_A3e-141486173MEF2 CHIMERA
6bz1_B3e-141486173MEF2 CHIMERA
6bz1_C3e-141486173MEF2 CHIMERA
6bz1_D3e-141486173MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10024652m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023640283.18e-51agamous-like MADS-box protein AGL30
TrEMBLR0HFL44e-68R0HFL4_9BRAS; Uncharacterized protein
STRINGXP_006295546.16e-69(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73301838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26320.11e-33AGAMOUS-like 33