PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10024732m

Common Name

CARUB_v10024732mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

BES1

Protein Properties

Length: 95aa MW: 11053.1 Da PI: 11.6969

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10024732m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	58.4	3.2e-18	33	67	22	56
DUF822 22 RRaiaakiyaGLRaqGnyklpkraDnneVlkALcr 56 Raiaak ++GLR +Gn+klpk+++nneVlkA c+ Carubv10024732m 33 ERAIAAKTFSGLRIHGNFKLPKHCENNEVLKAFCK 67 39********************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	1.3E-15	28	67	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 95 aa Download sequence Send to blast
MRLELRSNRF NSENDDARGR HRKMMIGRTR NGERAIAAKT FSGLRIHGNF KLPKHCENNE 60 VLKAFCKLQI VTVPMNEKKR LRLIRVCLTI RNMC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	16	24	ARGRHRKMM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10024732m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	R0FZJ4	1e-61	R0FZJ4_9BRAS; Uncharacterized protein
STRING	XP_006295619.1	2e-62	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15511	11	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50750.1	2e-13	BES1/BZR1 homolog 1

Link Out ? help Back to Top
Phytozome	Carubv10024732m
Entrez Gene	17889277