PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10024743m
Common NameCARUB_v10024743mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GRAS
Protein Properties Length: 639aa    MW: 69898.5 Da    PI: 5.7317
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10024743mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS309.57.5e-952686372374
             GRAS   2 velLlecAeavss.gdle.....laqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                      +e+L+++Ae + + g+++     laq +Larl+++ +s++++p+qR+a++++eAL + +++      ++ pp   +++n + ++aa++ fse+s
  Carubv10024743m 268 IEQLFNAAELIGTtGNTNgdhtvLAQGILARLNHHlNSNHKSPFQRAASHIAEALLSLIHN------DSSPPPLITPENLILRIAAYRSFSETS 355
                      678888888886543333444469*********99899999********************......88888888899**************** PP

             GRAS  89 PilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLas.....RpegppslRiTgvgspesg..skeeleetgerLakfAeelg 173
                      P+l+f ++taNq Ile+ + +  +r+HiiDfd+++G+QW +L+q+Las     R++ + sl++T++++p s+  ++ el+ t+e+L+ fA e++
  Carubv10024743m 356 PFLQFVNFTANQSILESCNDSgfDRIHIIDFDVGYGGQWSSLMQELASggggrRRNRASSLKLTVFAPPPSTvsDEFELRFTEENLKTFAGEVK 449
                      ******************99888************************744443557899*********9988899******************* PP

             GRAS 174 vpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                      +pfe ++l  + l +  ++ L++++  +Ea+aVnl ++             + + +L+++k++sP+vvv++++ +d+n+++F + +++al+y++
  Carubv10024743m 450 IPFEVELLSIELLLNPAYWPLSLRSseKEAIAVNLPINSVVP--------GYLPLILRFLKQISPNVVVCSDRGCDRNDAPFPNAVIHALQYHT 535
                      ********88888888999998887779*******9954433........35667*************************************** PP

             GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359
                      +l++sl+a+   ++++++++Er++++++i++++++++++     e+ + Wr+ ++++GF+p++ls++a++qa++ll++ +++g++ve+++ slv
  Carubv10024743m 536 TLLESLDAN---QNQDDSSIERFWVQPSIEKLLMKRHRW----IERSHPWRSLITQCGFSPASLSQTAEAQAECLLQRNPVRGFHVEKRQSSLV 622
                      *********...89*************************....78888********************************************** PP

             GRAS 360 lgWkdrpLvsvSaWr 374
                      ++W++++Lv+vSaW+
  Carubv10024743m 623 MCWQRKELVTVSAWK 637
                      **************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.066242617IPR005202Transcription factor GRAS
PfamPF035142.6E-92268637IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 639 aa     Download sequence    Send to blast
MPLSFERFQG EGVFGLSSSS SFYPDSHKTW FNQDKSGFTE AKEEDDLGYV VGCLLPEPTS  60
VLDALRSPSP LASHSSTTTT LSSSHGGGTT VTATAVTACD DNKCSQMGLD DLDGVLSASS  120
PGQEQSILRL IMDPGSGFGV FDPGFGFGSA SGPAPLPVTE NSNPLCSFPF QEITNPAEAL  180
VNPTTSHCMF SNPPLSPPAK RFHSGSHHQP VFPFSDPDPG RQHQFQFQFP FQFHHSQQQQ  240
IPSSSSSAVA MVPVPPPGMA GDDQSVIIEQ LFNAAELIGT TGNTNGDHTV LAQGILARLN  300
HHLNSNHKSP FQRAASHIAE ALLSLIHNDS SPPPLITPEN LILRIAAYRS FSETSPFLQF  360
VNFTANQSIL ESCNDSGFDR IHIIDFDVGY GGQWSSLMQE LASGGGGRRR NRASSLKLTV  420
FAPPPSTVSD EFELRFTEEN LKTFAGEVKI PFEVELLSIE LLLNPAYWPL SLRSSEKEAI  480
AVNLPINSVV PGYLPLILRF LKQISPNVVV CSDRGCDRND APFPNAVIHA LQYHTTLLES  540
LDANQNQDDS SIERFWVQPS IEKLLMKRHR WIERSHPWRS LITQCGFSPA SLSQTAEAQA  600
ECLLQRNPVR GFHVEKRQSS LVMCWQRKEL VTVSAWKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-2930563734375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10024743m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2546050.0AC254605.1 Capsella rubella clone CAP23-M05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006295629.10.0scarecrow-like protein 27
SwissprotQ7XJM80.0SCL27_ARATH; Scarecrow-like protein 27
TrEMBLR0FZJ90.0R0FZJ9_9BRAS; Uncharacterized protein
STRINGXP_006295629.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134171828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45160.10.0GRAS family protein
Publications ? help Back to Top
  1. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]
  2. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  3. Takanashi H, et al.
    miRNAs control HAM1 functions at the single-cell-layer level and are essential for normal embryogenesis in Arabidopsis.
    Plant Mol. Biol., 2018. 96(6): p. 627-640
    [PMID:29574557]