PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10024841m
Common NameCARUB_v10024841mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 124aa    MW: 14229.6 Da    PI: 8.2127
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10024841mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.92.4e-1014106386
                      EE-..-HHHHTT-EE--HHH.HTT........---....--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
               B3   3 kvltpsdvlksgrlvlpkkfaeeh........ggkke..esktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                      k+l++ dv k+grl lpk+ + +         ++  +  ++++l + d  ++ s++v l+ r+ s+ yvl++GW+    + +LkegD + ++ d
  Carubv10024841m  14 KTLSRTDVDKHGRLHLPKSQVLSVlrkmtyatEE--RllNGIELEVLDiMKNHSYSVILKSRNPSKDYVLGTGWSALKYSLELKEGDNLKLYWD 105
                      8999*****************9999888776533..14478999999967779******99999999********************9999965 PP

                      S CS
               B3  86 g 86 
                      +
  Carubv10024841m 106 H 106
                      4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.15E-1510112IPR015300DNA-binding pseudobarrel domain
CDDcd100171.52E-1411114No hitNo description
Gene3DG3DSA:2.40.330.103.6E-1211113IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.2E-1012117IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MEGLRLDGDM IISKTLSRTD VDKHGRLHLP KSQVLSVLRK MTYATEERLL NGIELEVLDI  60
MKNHSYSVIL KSRNPSKDYV LGTGWSALKY SLELKEGDNL KLYWDHLNCK FIILNCEYSL  120
IPF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10024841m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006296022.12e-67putative B3 domain-containing protein At2g21920
SwissprotQ9SJ072e-55Y2192_ARATH; Putative B3 domain-containing protein At2g21920
TrEMBLR0HTA22e-84R0HTA2_9BRAS; Uncharacterized protein
STRINGXP_006295722.13e-85(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15428310
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08985.13e-16B3 family protein