PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10024931m

Common Name

CARUB_v10024931mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

G2-like

Protein Properties

Length: 194aa MW: 20892.6 Da PI: 9.0624

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10024931m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	80.1	2.7e-25	17	69	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 p l+Wtp+LH+rFv+av++L G+++ +P+ti++lm+v+gLt+e+v+ HLQ YRl Carubv10024931m 17 PCLVWTPQLHKRFVDAVAHL-GIKNEVPQTIMQLMSVDGLTRENVANHLQNYRL 69 5689**************.9*****************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.05E-16	13	73	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.7E-25	15	74	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-19	19	69	IPR006447	Myb domain, plants
Pfam	PF00249	1.7E-7	20	68	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
LGSGAAGDEP ARTLKRPCLV WTPQLHKRFV DAVAHLGIKN EVPQTIMQLM SVDGLTRENV 60 ANHLQNYRLY LKRMQGLSSG GGAGSDPAID RLFASSPASA HFLHPNRVPS SDNFMPSFVL 120 VATLQQQQQM AAAANPHLQP PQFYHRQIAA AHIGSPTNGG FHSPTIGNYA EDLESANANG 180 GRTVLTLFPT RDY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lxu_A	7e-30	16	72	1	57	Transcription factor LUX
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269\|PubMed:20331973}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10024931m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269\|PubMed:20331973}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006298091.1	1e-98	transcription factor MYBC1
Swissprot	O22210	7e-48	MYBC1_ARATH; Transcription factor MYBC1
TrEMBL	R0HX89	1e-141	R0HX89_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_006295805.1	1e-141	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1549	27	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10760.1	8e-93	G2-like family protein

Link Out ? help Back to Top
Phytozome	Carubv10024931m
Entrez Gene	17889952

Publications ? help Back to Top
Sardesai N,Laluk K,Mengiste T,Gelvin S The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium. Plant Signal Behav, 2018. [PMID:24785741]