PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10024968m
Common NameCARUB_v10024968mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family M-type_MADS
Protein Properties Length: 168aa    MW: 20004.2 Da    PI: 9.9115
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10024968mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.74e-15957149
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     k+ien++ r  tf +R+  i+KKA ELS   d+ev+v+++s+t+  +++
  Carubv10024968m  9 KFIENERSRLSTFQRRQCSIFKKADELSKIPDVEVCVLLVSPTNIPHTF 57
                     79*****************************************998888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554555.36E-18171IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.376161IPR002100Transcription factor, MADS-box
SMARTSM004325.2E-17160IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-7323IPR002100Transcription factor, MADS-box
PfamPF003191.7E-151057IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-72338IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-73859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MARQKREIKF IENERSRLST FQRRQCSIFK KADELSKIPD VEVCVLLVSP TNIPHTFGKP  60
SLIKNVERNL MKELERLEMH EEILRKRNQE ELEKSKMKEK VELEDLVAFK EKLEALQADR  120
RRRHEEMKAS ASLLLLSEET TNKKMKIEAD PREKYELRPR IPRNYVE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120145RRRHEEMKASASLLLLSEETTNKKMK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10024968m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006295835.11e-115agamous-like MADS-box protein AGL29
TrEMBLR0HXB81e-114R0HXB8_9BRAS; Uncharacterized protein
STRINGXP_006295835.11e-115(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16164513
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47760.12e-44AGAMOUS-like 102