PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10025047m
Common NameCARUB_v10025047mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family Trihelix
Protein Properties Length: 396aa    MW: 43086.3 Da    PI: 9.4585
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10025047mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix681.9e-2171162187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 
                      +W+ +e+ aLi+++r+++ +l+rg+lk+++Weev++++     +   +++++qC++k+e+l+kry+ + +++++   ++  s++++f+++ea
  Carubv10025047m  71 CWSLEETIALIDGYRDKWYDLNRGNLKANHWEEVAEAVgascPDVTPKKTAVQCRHKMEKLRKRYRTEIQRARSVpVARFISSWVHFKRMEA 162
                      7************************************988778888899*************************977999**********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.0E-1970163No hitNo description
PROSITE profilePS500906.21472132IPR017877Myb-like domain
SMARTSM005951.1E-1579168IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MSDPDSPMNQ DPIADPSPVR IESSPRALVP PPLSSAAQDD DSAEPASVAD LKSASVPVAA  60
AKNSRRLPPP CWSLEETIAL IDGYRDKWYD LNRGNLKANH WEEVAEAVGA SCPDVTPKKT  120
AVQCRHKMEK LRKRYRTEIQ RARSVPVARF ISSWVHFKRM EAMENRPEIK QGNESGEEDH  180
DDGNYTARYQ FKNGGGGGSV ARTTPRFFNR NGTAGSGGGG SGSSGGIRIR IPTGVSIAQA  240
GPRFPGKIDQ KYTASPGSGM SSNPRLGRGL GAGGSNYSAR VARLPEGGGG KRGRDMMMKT  300
EEDDENDNDN DPMVEIASAI KLLGDTLLRT EQTRMEMTKE IEAMRRETEM KRTKMILESQ  360
QRLVEAFAKT IAENTEEKKK KARRMSSSSL AAADS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10025047m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006293533.10.0trihelix transcription factor ASIL2
TrEMBLR0FV430.0R0FV43_9BRAS; Uncharacterized protein
STRINGXP_006293533.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM89632534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.11e-175Trihelix family protein