PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10025067m

Common Name

CARUB_v10025067mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

LBD

Protein Properties

Length: 189aa MW: 21261.8 Da PI: 5.727

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10025067m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	120.8	7.3e-38	7	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C +Ck+lrrkC ++Cv+apyf+ e+ +++fa++hk+FGasn +kl+++lp+++r da++++ yeA+ r++dP+yG+v+ i++lqqq+ +l+a+ Carubv10025067m 7 PCGGCKFLRRKCIEGCVFAPYFCYEEgSSNFAAIHKVFGASNFSKLISHLPDHDRCDAVRTISYEAHSRLHDPIYGCVSQIFSLQQQVVSLQAQ 100 7*********************9979**************************************************************** PP DUF260 94 lallkee 100 ++ll+ee Carubv10025067m 101 VVLLREE 107 *999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.309	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.6E-35	7	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MGGLGSPCGG CKFLRRKCIE GCVFAPYFCY EEGSSNFAAI HKVFGASNFS KLISHLPDHD 60 RCDAVRTISY EAHSRLHDPI YGCVSQIFSL QQQVVSLQAQ VVLLREEASR RFHQEDPGCD 120 LKQQEKVLSQ QMPLDLHNWF HQGILDSDLD PMSGTATHDH EQSMDRNESL CSSSESLYYQ 180 EVNFPWSV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-36	3	101	7	104	LOB family transfactor Ramosa2.1
5ly0_B	1e-36	3	101	7	104	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10025067m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473850	0.0	AB473850.1 Arabidopsis thaliana ASL17 mRNA for ASYMMETRIC LEAVES2-like 17 protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006295930.1	1e-140	LOB domain-containing protein 14
Swissprot	Q9SJW5	1e-126	LBD14_ARATH; LOB domain-containing protein 14
TrEMBL	R0HXL4	1e-138	R0HXL4_9BRAS; Uncharacterized protein
STRING	XP_006295930.1	1e-139	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM108	28	359

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31310.1	1e-102	LOB domain-containing protein 14

Link Out ? help Back to Top
Phytozome	Carubv10025067m
Entrez Gene	17889680

Publications ? help Back to Top
Jeon E, et al. LBD14/ASL17 Positively Regulates Lateral Root Formation and is Involved in ABA Response for Root Architecture in Arabidopsis. Plant Cell Physiol., 2017. 58(12): p. 2190-2201 [PMID:29040694]