PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10025168m
Common NameCARUB_v10025168mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 125aa    MW: 14324.5 Da    PI: 5.1803
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10025168mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3322.2e-1015104383
                      EE-..-HHHHTT-EE--HHH.HTT........---.....--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
               B3   3 kvltpsdvlksgrlvlpkkfaeeh........ggkke...esktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                      k+lt+ dv k+gr+ lpk+ + +         +   e   ++++l + d  ++ s++v l+ r+ s+++vl++GW+    + +LkegD + ++
  Carubv10025168m  15 KTLTRTDVDKHGRMHLPKSQVLSVltkmkdvtE---EsllNGIELEVLDtINNHSYSVILKSRNISKEFVLGTGWSTLKYSLELKEGDNLKLY 104
                      89*******************999998865542...14457889999996777***********************************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.9E-1111106IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-1411107IPR015300DNA-binding pseudobarrel domain
CDDcd100173.74E-1412117No hitNo description
SMARTSM010193.3E-1013118IPR003340B3 DNA binding domain
PfamPF023622.3E-715105IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MDAGFDIDGD MIISKTLTRT DVDKHGRMHL PKSQVLSVLT KMKDVTEESL LNGIELEVLD  60
TINNHSYSVI LKSRNISKEF VLGTGWSTLK YSLELKEGDN LKLYWDYLNY KFIILNFEYS  120
LIPF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10025168m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006296022.13e-85putative B3 domain-containing protein At2g21920
SwissprotQ9SJ072e-58Y2192_ARATH; Putative B3 domain-containing protein At2g21920
TrEMBLR0HU276e-84R0HU27_9BRAS; Uncharacterized protein
STRINGXP_006296022.11e-84(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15428310
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08985.11e-13B3 family protein