PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10025317m
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family M-type_MADS
Protein Properties Length: 253aa    MW: 29342.4 Da    PI: 6.6763
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10025317mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF29.78.5e-101251342
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     i+n+s r +t+ +R  g+ KK +E+ +LC+++++ +i+ +
  Carubv10025317m 12 ISNDSIRRTTLRRRGDGLKKKLSEIKTLCGVDACAVIYDP 51
                     9*********************************999965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.2E-10261IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.886249IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-15379IPR002100Transcription factor, MADS-box
CDDcd002662.31E-20380No hitNo description
PfamPF003197.1E-111252IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MGKRRKLKLA YISNDSIRRT TLRRRGDGLK KKLSEIKTLC GVDACAVIYD PEKPTPDVWP  60
SEPEVSDVIK RVDTETATKR IMMNQKDFLN QCIEKAKKQE RRMVEDNKEI RLKEAMFKCL  120
EGGKMGDPDM NNKDRRELCE FVDKYLKNLY YHRDVTLKNP DFEIGESSSR HMVPSYVPVM  180
APPPPMAETN QGAADIDLQI SNNQEVYIPA VNQDEFHYPN QNHDGTQDQG FIEQMMKYGE  240
ETNFPWMDHK QF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10025317m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006296573.20.0agamous-like MADS-box protein AGL80 isoform X1
TrEMBLR0FZN51e-169R0FZN5_9BRAS; Uncharacterized protein
STRINGXP_006295398.11e-169(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28700.18e-54AGAMOUS-like 46