PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10025359m
Common NameCARUB_v10025359mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 134aa    MW: 15542 Da    PI: 8.7973
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10025359mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.91.3e-1124113383
                      EE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
               B3   3 kvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                      k+lt+ dv ++grl lpk+ + +         +++ +++++l + d +++ s++v l+ r+ s+ yvl++GW+   ++ +LkegD + ++
  Carubv10025359m  24 KTLTRTDVDQHGRLLLPKSQVLTVlqkmnnvtQESLQNGIELEVLDmTKNHSYSVILKSRNASNDYVLATGWSTLKHSLELKEGDNIKLY 113
                      89******************999999888777333348899999998888***********************************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.23E-1520116IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.8E-1320115IPR015300DNA-binding pseudobarrel domain
CDDcd100171.10E-1421126No hitNo description
SMARTSM010191.3E-822127IPR003340B3 DNA binding domain
PfamPF023621.9E-824114IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
INLLFQKRVK MENFKIDGDM IISKTLTRTD VDQHGRLLLP KSQVLTVLQK MNNVTQESLQ  60
NGIELEVLDM TKNHSYSVIL KSRNASNDYV LATGWSTLKH SLELKEGDNI KLYWDYLNYK  120
FIILNFEYSL IPF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10025359m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006296022.11e-67putative B3 domain-containing protein At2g21920
SwissprotQ9SJ073e-65Y2192_ARATH; Putative B3 domain-containing protein At2g21920
TrEMBLR0G1299e-92R0G129_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006296189.12e-92(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15428310
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08985.13e-15B3 family protein