PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10025369m
Common NameCARUB_v10025369mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 259aa    MW: 29439.2 Da    PI: 6.2579
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10025369mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.1e-1972120355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f tae+Aa a+++a+ +l+g
  Carubv10025369m  72 YRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFETAEKAALAYDQAAFQLRG 120
                      9******9.**********965...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.4E-3271129IPR001471AP2/ERF domain
PROSITE profilePS5103222.87971128IPR001471AP2/ERF domain
SMARTSM003801.2E-3771134IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-2271129IPR016177DNA-binding domain
CDDcd000181.53E-3272130No hitNo description
PRINTSPR003676.3E-117283IPR001471AP2/ERF domain
PfamPF008476.8E-1472120IPR001471AP2/ERF domain
PRINTSPR003676.3E-1194110IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
METASVSFHE SNETFGFNQP KPLGLNQLTP YQIHQIQNQL NHRRNTISNL SLNPIPMKSF  60
SPPSSSKAKN LYRGVRQRHW GKWVAEIRLP KNRTRLWLGT FETAEKAALA YDQAAFQLRG  120
DMAKLNFPNL IHEDVNSLPS SVYAKLQAIC KSLRKTEDAC SVSDQTEEKE TCSFSDKIEF  180
FLPKTELFLP KTEHLEAEEF SDGSRRMDEN MLPVGYSSSD IKLLDFSDYE FEKTGSFGLV  240
KFPSVEIDWD AISKLSDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2272128360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-2272128663ATERF1
3gcc_A2e-2272128663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10025369m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023640735.11e-179ethylene-responsive transcription factor ERF056
SwissprotQ9SIE41e-139ERF56_ARATH; Ethylene-responsive transcription factor ERF056
TrEMBLR0G1430.0R0G143_9BRAS; Uncharacterized protein
STRINGXP_006296204.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26802768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22200.11e-135ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]