PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10025377m
Common NameCARUB_v10025377mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NF-YB
Protein Properties Length: 155aa    MW: 17729.6 Da    PI: 7.0043
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10025377mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB168.39.2e-5342137297
            NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                      +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wa+a+lGf+dy+  l+ yl++yr +eg
  Carubv10025377m  42 KEQDRLLPIANVGRIMKNILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTLNGDDICWAMANLGFDDYAGHLTNYLHRYRVTEG 135
                      89*******************************************************************************************9 PP

            NF-YB  96 ek 97 
                      e+
  Carubv10025377m 136 ER 137
                      97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.9E-5135146IPR009072Histone-fold
SuperFamilySSF471133.73E-3944145IPR009072Histone-fold
PfamPF008087.4E-2847111IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.5E-157593No hitNo description
PROSITE patternPS0068507894IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006153.5E-1594112No hitNo description
PRINTSPR006153.5E-15113131No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MAGDNPWFQN PTPRYQNYNF GSSSSRDHHG VDDDRQEEEN IKEQDRLLPI ANVGRIMKNI  60
LPPNAKISKE AKETMQECVS EFISFVTGEA SDKCHKEKRK TLNGDDICWA MANLGFDDYA  120
GHLTNYLHRY RVTEGERANH HHHHHHHQGK GAKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B5e-4341131191Transcription factor HapC (Eurofung)
4g92_B5e-4341131191Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10025377m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006296212.11e-115nuclear transcription factor Y subunit B-5
SwissprotO822488e-80NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLR0HUM71e-114R0HUM7_9BRAS; Uncharacterized protein
STRINGXP_006296212.11e-114(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25528229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.12e-80nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]