PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10025530m
Common NameCARUB_v10025530mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 174aa    MW: 19563 Da    PI: 9.7036
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10025530mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.25.7e-2052100355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++ a+ k++g
  Carubv10025530m  52 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFKTAEEAARAYDVAAIKIRG 100
                      9*******.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.3E-4251114IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-3351109IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-2351109IPR016177DNA-binding domain
PROSITE profilePS5103225.34351108IPR001471AP2/ERF domain
CDDcd000181.37E-3552110No hitNo description
PRINTSPR003674.2E-125263IPR001471AP2/ERF domain
PfamPF008471.5E-1352100IPR001471AP2/ERF domain
PRINTSPR003674.2E-127490IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0034059Biological Processresponse to anoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MCGGAVISDF MWSKSSFAES VPNEVGSVSN KKRKPVTGGG QRDGKRERKN LYRGIRQRPW  60
GKWAAEIRDP RKGVRVWLGT FKTAEEAARA YDVAAIKIRG RKAKLNFPNT TSETNQNETI  120
PENHQVVVES LSEELMAFED YMRLYQIPFL DDDQSATDLG NLWSFQGDTL TKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2352108663ATERF1
3gcc_A4e-2352108663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10025530m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0025357e-95AC002535.3 Arabidopsis thaliana chromosome 2 clone T30B22 map CIC06C03, complete sequence.
GenBankAY0746457e-95AY074645.1 Arabidopsis thaliana At2g47520/T30B22.18 mRNA, complete cds.
GenBankCP0026857e-95CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006296358.11e-127ethylene-responsive transcription factor ERF071
SwissprotO222593e-86ERF71_ARATH; Ethylene-responsive transcription factor ERF071
TrEMBLR0G1V41e-126R0G1V4_9BRAS; Uncharacterized protein
STRINGXP_006296358.11e-127(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.17e-79ERF family protein
Publications ? help Back to Top
  1. Gasch P, et al.
    Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis.
    Plant Cell, 2016. 28(1): p. 160-80
    [PMID:26668304]
  2. Yao Y,Chen X,Wu AM
    ERF-VII members exhibit synergistic and separate roles in Arabidopsis.
    Plant Signal Behav, 2017. 12(6): p. e1329073
    [PMID:28537474]
  3. Eysholdt-Derzsó E,Sauter M
    Root Bending Is Antagonistically Affected by Hypoxia and ERF-Mediated Transcription via Auxin Signaling.
    Plant Physiol., 2017. 175(1): p. 412-423
    [PMID:28698356]
  4. Eysholdt-Derzsó E,Sauter M
    Hypoxia and the group VII ethylene response transcription factor HRE2 promote adventitious root elongation in Arabidopsis.
    Plant Biol (Stuttg), 2019. 21 Suppl 1: p. 103-108
    [PMID:29996004]