PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10025621m
Common NameCARUB_v10025621mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family M-type_MADS
Protein Properties Length: 115aa    MW: 13222.6 Da    PI: 10.0314
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10025621mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.84.4e-161255245
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                     +ie    r+  +skR++gilKKAeEL  LCd+++ ++++s+ +k
  Carubv10025621m 12 KIECPKERSNKYSKRKKGILKKAEELALLCDVDIVMVLISPANK 55
                     67777889999*****************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.7E-20362IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.17363IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-20481IPR002100Transcription factor, MADS-box
CDDcd002665.85E-17484No hitNo description
PRINTSPR004041.1E-12525IPR002100Transcription factor, MADS-box
PfamPF003192.2E-161257IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-122540IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-124061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
EKIGKMKIEL KKIECPKERS NKYSKRKKGI LKKAEELALL CDVDIVMVLI SPANKPTIFH  60
TPSRNLSQIL KDFSNISIQE RNERFDLSDC HITITLSTLH NFIVFFSIYI KTNI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10025621m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006296441.29e-50agamous-like MADS-box protein AGL65
TrEMBLR0HI124e-76R0HI12_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006296441.16e-77(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73301838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26320.13e-34AGAMOUS-like 33