PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10025699m

Common Name

CARUB_v10025699mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

M-type_MADS

Protein Properties

Length: 210aa MW: 23729.3 Da PI: 4.3065

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10025699m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	38.7	1.3e-12	11	49	1	39
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevavii 39 k+i +k r vtfskRr+g+ KA+EL+ L d++ a++ Carubv10025699m 11 KKIREKDPRGVTFSKRRTGLYSKASELCLLSDTQMAILT 49 67889999****************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.2E-10	3	63	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	15.629	3	48	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.9E-8	5	25	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.27E-15	5	78	IPR002100	Transcription factor, MADS-box
CDD	cd00266	8.92E-21	5	82	No hit	No description
Pfam	PF00319	1.3E-11	12	53	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.9E-8	25	40	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MVGLKRKIDI KKIREKDPRG VTFSKRRTGL YSKASELCLL SDTQMAILTT PVSSNSHASF 60 YSFGHSSVDS VVAAFLTDQT PPRDEDDDDE KLGFWWEDES LVDTEDQEEL GEVIDSMKKM 120 LNDLKELENK RRDREDVEKE KGVSHVTCQE QTLIHQPCSS SLCFDQDDVT VNQEFSLDEI 180 FDLVTSSEVA EMNLGMSYNN KNNNALLGF*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10025699m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006296511.1	1e-154	agamous-like MADS-box protein AGL97
Swissprot	Q9C633	8e-64	AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBL	R0HI75	1e-153	R0HI75_9BRAS; Uncharacterized protein
STRING	XP_006296511.1	1e-153	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM454	17	145

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04640.1	9e-58	AGAMOUS-like 99

Link Out ? help Back to Top
Phytozome	Carubv10025699m
Entrez Gene	17887903

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]