PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10025787m
Common NameCARUB_v10025787mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family CAMTA
Protein Properties Length: 1056aa    MW: 117812 Da    PI: 6.365
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10025787mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1188.37.8e-59191362118
             CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 
                      l+e ++rwl++ ei++iL n++k+++++e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+++vl+cyYah+e+n++f
  Carubv10025787m  19 LSEaQHRWLRPAEICEILRNHQKFHIASEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEDNENF 112
                      45559***************************************************************************************** PP

             CG-1  95 qrrcywlLeeelekivlvhylevk 118
                      qrrcyw+Le++l +iv+vhylevk
  Carubv10025787m 113 QRRCYWMLEQDLMHIVFVHYLEVK 136
                      *********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143786.27515141IPR005559CG-1 DNA-binding domain
SMARTSM010763.6E-8718136IPR005559CG-1 DNA-binding domain
PfamPF038598.4E-5221135IPR005559CG-1 DNA-binding domain
SuperFamilySSF812964.06E-13465549IPR014756Immunoglobulin E-set
SuperFamilySSF484037.0E-19646757IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029719.28646757IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.206.7E-18647758IPR020683Ankyrin repeat-containing domain
PfamPF127962.3E-7651723IPR020683Ankyrin repeat-containing domain
CDDcd002042.19E-14652755No hitNo description
SMARTSM002483200663692IPR002110Ankyrin repeat
PROSITE profilePS500888.71663695IPR002110Ankyrin repeat
SMARTSM002480.0029696725IPR002110Ankyrin repeat
PROSITE profilePS5008810.873696728IPR002110Ankyrin repeat
SMARTSM000150.32871893IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525408.23E-8872921IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF006120.002873892IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.858873901IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0092894916IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.304895919IPR000048IQ motif, EF-hand binding site
PfamPF006124.6E-4897916IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1056 aa     Download sequence    Send to blast
MADRGSFGFA PRLDIKQLLS EAQHRWLRPA EICEILRNHQ KFHIASEPPN RPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSIDVLH CYYAHGEDNE NFQRRCYWML  120
EQDLMHIVFV HYLEVKGNRM STGGTKENHS NSLSGTGSVN VDSTATRSSI LSPLCEDADS  180
GDSHQASSSL QPNPEPQIMH HQNASTMNSF NTSSVLGNRD GWTSAPAIGI VPQVHENRVK  240
ESDSQRSGDV PVWDASFENS LARYQNLPYN APSTQTQPSN FGLMPMEGKT GSLLTAEHLR  300
NPLQNQVNWQ IPVQESLPLQ KWPMDSHSGM TDATDLALFG QRAHGNFGTF SSLLGCQNQQ  360
PSSFQAPFTN NEAAYIPKLG PEDLIYEASA NQTLPLRKAL LKTEDSLKKV DSFSRWVSKE  420
LGEMEDLQMQ SSSGGIAWTS VECETAAAGS SLSPSLSEVQ RFTMIDFWPK WTQTDSEVEV  480
MVIGTFLLSP KEVTSYSWSC MFGEVEVPAE ILVDGVLCCH APPHEVGRVP FYITCSDRFS  540
CSEVREFDFL PGSTRKLNAT DVYGANTIEA SLHLRFENLL ALRSSVQEHH IFENVGQKRR  600
KISKIMLLMD EKESLLPGTI EKDSTELEAK ERLIREEFED KLYLWLIHKV TEEGKGPNIL  660
DEVGQGVLHL AAALGYDWAI KPILAAGVSI NFRDANGWSA LHWAAFSGRE DTVAVLVSLG  720
ADAGALADPS PEHPLGKTAA DLAYGNGHRG ISGFLAESSL TSYLEKLTVD AKENSSADSS  780
GAKAVLTVAE RTATPMSYGD VPETLSMKDS LTAVLNATQA ADRLHQVFRM QSFQRKQLSE  840
LGGDNEFDIS DELAVSFAAA KTKKPGHSNG AVHAAAVQIQ KKYRGWKKRK EFLLIRQRIV  900
KIQAHVRGHQ VRKQYRAIIW SVGLLEKIIL RWRRKGSGLR GFKRDTITKP PEPVCPAPQE  960
DDYDFLKEGR KQTEERLQKA LTRVKSMAQY PEARAQYRRL LTVVEGFREN EASSSSALRN  1020
NNSNTEEAAN YNEEDDLIDI DSLLDDDTFM SLTFE*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10025787m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4938110.0AB493811.1 Arabidopsis thaliana At5g64220 mRNA for hypothetical protein, partial cds, clone: RAAt5g64220.
GenBankAK2294030.0AK229403.1 Arabidopsis thaliana mRNA for Calmodulin-binding transcription activator 2, complete cds, clone: RAFL16-66-C08.
GenBankBT0108740.0BT010874.1 Arabidopsis thaliana At5g64220 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006279929.10.0calmodulin-binding transcription activator 2 isoform X1
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLR0EUM40.0R0EUM4_9BRAS; Uncharacterized protein
STRINGXP_006279929.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40822452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]