PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10025972m
Common NameCARUB_v10025972mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C3H
Protein Properties Length: 719aa    MW: 78695.9 Da    PI: 6.1357
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10025972mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.73e-06456476525
                      --SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                      +C++f   G+C++Gd+C F+H
  Carubv10025972m 456 PCNNFITKGFCHRGDSCLFSH 476
                      7******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.49E-6397422IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.159397424IPR000571Zinc finger, CCCH-type
SMARTSM003560.018398423IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4401422IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.934426453IPR000571Zinc finger, CCCH-type
SMARTSM003560.0025426452IPR000571Zinc finger, CCCH-type
SMARTSM003562.7454478IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-6455481IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.704456479IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
PTRRPLLRRD ESDRSVTGLD CLLADTMESS VATFPHRRRH LPNRTYRSLL HHLCSSFDRE  60
PRVSLATPAV LQELVSRTEI AQVSPEEVCK LPEDSSMVDS KSSEVSSGDS RCEKVETISE  120
EKSLMLGDVF DGIDLQDATV GSQHKDFFDD FELMINGSGE FVPESCVNLF GALDVNDYGD  180
GVVASLDDIA KQPLDSVQNV VEKPNISIEV QIDPVESDKK GEEVPKSVES NEIISSGVLE  240
ACNERDQREM ELEKTVNSTQ VLVDSLPQIV EDDDVEEGEL SGDDNDYMLV GDDEPVERHE  300
ESHVSQEGIG NSHLISHETF GKKLGVEVSN VDNRAKKSDQ TFSNEAKIDP ETSIKKRSGP  360
SKDAKARKRA NARKKRAQER IALGVKKLKL KPVAPKPKPI KYCRHYIKGR CHEGDKCKFS  420
HDTIPETKSS PCCYFATQSC MKGDDCPYDH DLSKYPCNNF ITKGFCHRGD SCLFSHKGAP  480
QSASDTSNAN VTASSTNIAS ASFLLQKTNK QSVREAIARL PAIQARVSSS VAFVKPLGQS  540
NQRNSSDASS PKRINEHATP PQVPPLRKPS VAPKGMSFLS LDNTVKPSPV SKPSTDSSDN  600
QTLKQSQQGS LVPVVAPKGI SFLSFASEEP KDMKREPQEP ASSRILKTTP NSHIQSSLHS  660
AMKLAAEFES AKAEKSSNDP VEAVNKGEVK VNTTVTRNSG NVSSQILEFL SSFSHGKN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1354375KKRSGPSKDAKARKRANARKKR
2366388RKRANARKKRAQERIALGVKKLK
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10025972m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0240350.0AB024035.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHM17.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280089.20.0zinc finger CCCH domain-containing protein 65
SwissprotQ9LTS70.0C3H65_ARATH; Zinc finger CCCH domain-containing protein 65
TrEMBLR0EV460.0R0EV46_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006280089.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121601516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.25e-06C3H family protein