PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10026292m
Common NameCARUB_v10026292mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family AP2
Protein Properties Length: 491aa    MW: 53784.5 Da    PI: 7.1268
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10026292mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.27.6e-17163212155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Carubv10026292m 163 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAVKFRG 212
                      78*******************......55***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-8163212IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-15163220IPR016177DNA-binding domain
CDDcd000182.57E-11163219No hitNo description
PROSITE profilePS5103217.359164220IPR001471AP2/ERF domain
SMARTSM003801.3E-30164226IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-16164220IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MLDLNLDVDS TESTQNGRDS VTVKGVSLNQ MDESVTSNSS VVNAEASSCI DGEEELCSTR  60
TVKFQFEILK GGGEEDEGED DDNDDRSALM MTKDFFPVPR DGINFMDSSA QSSRSTVDIS  120
FQRGKQGGDF VGSGSGGGDA ARVMQPPSQP VKKSRRGPRS KSSQYRGVTF YRRTGRWESH  180
IWDCGKQVYL GGFDTAHAAA RAYDRAAVKF RGLEADINFI ISDYEEDLKQ MANLSKEEVV  240
QVLRRQSSGF SRNNSRYQGV ALQKIGGWGA QMEQFHGNMA CDKAAIQWNG RQAASFIEPH  300
GSRMIPEAAN VKLDLNLGIS LSLGDGPKQK DRTHRLHHVP NSIICGRNTK MENHMAAASC  360
DTPFNFLKRG SDHLNNRQAL PSAFFSPMER TPEKGPMLRS HQSFPARTWQ GHDQSSGGTA  420
VAATAPQLFS NAASSGFSLS DTRPPSSPAT PQSSQPFVNL NHPGLYVIHP SDYTTQHHHH  480
NLMNRSQPPP *
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00616PBMTransfer from AT5G60120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10026292m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0019160.0BT001916.1 Arabidopsis thaliana clone C105157 putative APETALA2 protein (At5g60120) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280364.10.0AP2-like ethylene-responsive transcription factor TOE2
SwissprotQ9LVG20.0TOE2_ARATH; AP2-like ethylene-responsive transcription factor TOE2
TrEMBLR0EVS30.0R0EVS3_9BRAS; Uncharacterized protein
STRINGXP_006280364.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128361730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60120.10.0target of early activation tagged (EAT) 2