PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10026295m
Common NameCARUB_v10026295mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family AP2
Protein Properties Length: 490aa    MW: 54272.7 Da    PI: 6.6815
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10026295mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.21.3e-10230287156
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkklege 56 
                      s y+GV++++++gr++A+++d  +       rk  + g ++ +++Aa+a++ a++k++g+
  Carubv10026295m 230 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEDKAARAYDLAALKYWGH 287
                      57*******************4444.2344336655.7799999*************997 PP
2AP250.84.2e-16329380155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Carubv10026295m 329 SVYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 380
                      78****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-8230287IPR001471AP2/ERF domain
CDDcd000181.63E-18230296No hitNo description
SuperFamilySSF541715.1E-14230295IPR016177DNA-binding domain
SMARTSM003804.8E-20231300IPR001471AP2/ERF domain
PROSITE profilePS5103217.214231294IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-11231295IPR001471AP2/ERF domain
PRINTSPR003673.9E-6232243IPR001471AP2/ERF domain
PfamPF008472.1E-10329380IPR001471AP2/ERF domain
CDDcd000188.43E-11329388No hitNo description
SuperFamilySSF541719.15E-18329389IPR016177DNA-binding domain
SMARTSM003806.6E-30330394IPR001471AP2/ERF domain
PROSITE profilePS5103219.137330388IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-18330388IPR001471AP2/ERF domain
PRINTSPR003673.9E-6370390IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MAPPPMTNWL TFSRSPMELL KSPEHSHFPS SFDASSTPFL LDNFYEEAEI EAAATMADST  60
TLSTYFDSQI HSQTQIPKLE DFLGDSFVRY SDNQTETQDS SSSLTRFYDL SHHTVTGGVT  120
GFFSDHHDFK AVNSGSEIVD DSASNIVGTH LSGHAVVKSS STTAELGFNG GATTGEALSL  180
AVNNTSDQPL SCDNGERREN SKKMKTTVSK KETSDDSKKK VVEPLGQRTS IYRGVTRHRW  240
TGRYEAHLWD NSCRREGQAR KGRQGGYDKE DKAARAYDLA ALKYWGHTAT TNFPAASYSK  300
EVEDMNHMTK QEFIASLRRK SSGFSRGASV YRGVTRHHQQ GRWQARIGRV AGNKDLYLGT  360
FATEEEAAEA YDIAAIKFRG INAVTNFEMN RYDVEAVMKS SFPVGNSAKR HKLAVESPPS  420
SDHNLQQPLL PSSSSSDVNP NSIPCGIPFE SSVLYHHQNF FQHYPLASDS TVQAPMNPAE  480
FFLWTNPSY*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00589DAPTransfer from AT5G65510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10026295m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5608870.0AY560887.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g65510) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023636767.10.0AP2-like ethylene-responsive transcription factor AIL7 isoform X1
RefseqXP_023636770.10.0AP2-like ethylene-responsive transcription factor AIL7 isoform X1
SwissprotQ6J9N80.0AIL7_ARATH; AP2-like ethylene-responsive transcription factor AIL7
TrEMBLR0EWM60.0R0EWM6_9BRAS; Uncharacterized protein
STRINGXP_006280368.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33332765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65510.10.0AINTEGUMENTA-like 7
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]