PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10026667m
Common NameCARUB_v10026667mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family AP2
Protein Properties Length: 358aa    MW: 40348.7 Da    PI: 8.4502
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10026667mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.7e-17105155156
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                      s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g+
  Carubv10026667m 105 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRGA 155
                      78*******************......55*************************985 PP
2AP243.95.8e-14197247155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV+ +k  grW++++  +     + k+++lg f+t+ eAa+a+++a+ k +g
  Carubv10026667m 197 SKYRGVTLHK-CGRWESRLGQF----LNkKYVYLGLFDTEIEAARAYDKAAIKCNG 247
                      89********.7****995553....234**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.14E-16105163IPR016177DNA-binding domain
PfamPF008472.3E-9105154IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-17106162IPR001471AP2/ERF domain
SMARTSM003804.5E-31106168IPR001471AP2/ERF domain
CDDcd000181.32E-11106163No hitNo description
PROSITE profilePS5103217.912106162IPR001471AP2/ERF domain
CDDcd000184.25E-24197255No hitNo description
SuperFamilySSF541715.62E-17197256IPR016177DNA-binding domain
PfamPF008474.0E-9197247IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.8E-17198255IPR001471AP2/ERF domain
SMARTSM003805.7E-31198261IPR001471AP2/ERF domain
PROSITE profilePS5103215.488198255IPR001471AP2/ERF domain
PRINTSPR003675.2E-6199210IPR001471AP2/ERF domain
PRINTSPR003675.2E-6237257IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MWNLNDSPDH HDEQDSRGNR LGHVSNYVSQ STTWLPSVPP VTRNFFPSQV MEPGVREMFG  60
SGFNNINQSV GKSDPSGSGR RPEEPAPEIS PPLKKSRRGP RSRSSQYRGV TFYRRTGRWE  120
SHIWDCGKQV YLGGFDTAHA AARAYDRAAI KFRGADADIN FDIEDYMDDL KQMGNLTKEE  180
FMHVLRRQST GFPRGSSKYR GVTLHKCGRW ESRLGQFLNK KYVYLGLFDT EIEAARAYDK  240
AAIKCNGKDA VTNFDPKVYE EEDLIPEMKW NGHNLDLSLG ESNLEELGFK SDNRTRDEER  300
SLGSDLSLAM TTTAVRSEKQ SDGGGKRAGM AAASSGFSPH PSPWHHHTPN NFHLFRH*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). May regulate negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10026667m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1761450.0AK176145.1 Arabidopsis thaliana mRNA for floral homeotic protein apetala2-like, complete cds, clone: RAFL22-96-G17.
GenBankAY0882380.0AY088238.1 Arabidopsis thaliana clone 4623 mRNA, complete sequence.
GenBankBT0292060.0BT029206.1 Arabidopsis thaliana At5g67180 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280704.10.0AP2-like ethylene-responsive transcription factor TOE3 isoform X1
SwissprotQ9FH950.0TOE3_ARATH; AP2-like ethylene-responsive transcription factor TOE3
TrEMBLR0EWM50.0R0EWM5_9BRAS; Uncharacterized protein
STRINGXP_006280704.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22972875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67180.11e-167target of early activation tagged (EAT) 3
Publications ? help Back to Top
  1. Zumajo-Cardona C,Pabón-Mora N
    Evolution of the APETALA2 Gene Lineage in Seed Plants.
    Mol. Biol. Evol., 2016. 33(7): p. 1818-32
    [PMID:27030733]