PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10026733m

Common Name

CARUB_v10026733mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

SRS

Protein Properties

Length: 340aa MW: 36324.9 Da PI: 7.4806

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10026733m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	232.8	5.9e-72	125	274	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaesk 97 g+ sCqdCGnqakkdCah+RCRtCCksrg++C+thvkstWvpaakrrerqqql++ ++ +++++ e+ +kr+re+ +++++l +t+++ +++ Carubv10026733m 125 GGPSCQDCGNQAKKDCAHMRCRTCCKSRGLECSTHVKSTWVPAAKRRERQQQLTSGQEPQTQAQGESVPKRQREHFPARSNSLVCTRVAAINTS 218 6789*********************************************************************************9988755 PP DUF702 98 keletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 le+ s+P+evss+avfrcvrvss+dd+eee+aY+tavsigGhvfkGiLydqG++e Carubv10026733m 219 -GLEIGSFPPEVSSPAVFRCVRVSSIDDEEEEYAYKTAVSIGGHVFKGILYDQGPAE 274 .99*************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	3.0E-65	126	273	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	5.8E-27	128	170	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	9.3E-27	225	272	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009938	Biological Process	negative regulation of gibberellic acid mediated signaling pathway
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MAGFFSLGHA GGDGGRGDSQ DDHHHRRTNT SNPSPSGTES WLWCRNPNSN ANANDGGGDV 60 APSYKGTLEL WQHPNNQEII FQQQQQQRLD LYTSAAGLGV GPSNRSLIET SGGALMMMRS 120 GNSGGGPSCQ DCGNQAKKDC AHMRCRTCCK SRGLECSTHV KSTWVPAAKR RERQQQLTSG 180 QEPQTQAQGE SVPKRQREHF PARSNSLVCT RVAAINTSGL EIGSFPPEVS SPAVFRCVRV 240 SSIDDEEEEY AYKTAVSIGG HVFKGILYDQ GPAERSSSGG GSQPLNLITA ASSSSPNVSC 300 NNGVVGSTSD HYIEPASLNY PTPINTFMTG THFFSNPRS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10026733m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006280764.1	0.0	protein SHORT INTERNODES
Swissprot	Q9XGX0	0.0	SHI_ARATH; Protein SHORT INTERNODES
TrEMBL	R0EWR7	0.0	R0EWR7_9BRAS; Uncharacterized protein
STRING	XP_006280764.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3419	28	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	0.0	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Carubv10026733m
Entrez Gene	17874774

Publications ? help Back to Top
Islam MA, et al. Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] Pfannebecker KC,Lange M,Rupp O,Becker A An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]