PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10026842m
Common NameCARUB_v10026722mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HSF
Protein Properties Length: 306aa    MW: 35491.6 Da    PI: 6.1309
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10026842mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind66.36.7e-2136729102
                      EES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS
     HSF_DNA-bind  29 vvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkks 102
                      ++ ++ ef++++Lp++Fkh+nf+SF+RQLn+YgF+kv+ e+         weF ++ F +g+  l+++i+r+k 
  Carubv10026842m   3 IMENPAEFSRDLLPRFFKHKNFSSFIRQLNTYGFRKVDPEK---------WEFLNEDFVRGRPYLMKNIHRRKP 67 
                      567899********************************999.........*********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004159.0E-22265IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.6E-18465IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.2E-21465IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467859.66E-19465IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.6E-91426IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043401539IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-92739IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009733Biological Processresponse to auxin
GO:0009958Biological Processpositive gravitropism
GO:0048527Biological Processlateral root development
GO:0048530Biological Processfruit morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MKIMENPAEF SRDLLPRFFK HKNFSSFIRQ LNTYGFRKVD PEKWEFLNED FVRGRPYLMK  60
NIHRRKPVHS HSLSNIQAQN PLTESERRSM EDQIERLKKE KEGLLVELQS QEQERKDFEM  120
QVTTLKDRLQ HMEQHQKSIV AYVSQVLEKP GLSLNLENHE RRKRRLPETP LPASRSHVEQ  180
VENLESSLTF WENLVSESYE KSGVQSSSMD LDAAESSLSM GDTRPKSSKI DMNLEPPVTI  240
TAAAPKTGVN DDFWEQCLTE NPGSTEQQEV QSERKDVDND NGNKIGNQRT FWWNSGNVNN  300
ITEKA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). May be involved in general response to auxin. {ECO:0000269|PubMed:18381353}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10026842m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat and cold stresses and the herbicide 2,4-dichlorophenoxyacetic acid (2,4-D, auxin analog). {ECO:0000269|PubMed:18381353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2290580.0AK229058.1 Arabidopsis thaliana mRNA for heat shock transcription factor, complete cds, clone: RAFL16-34-M14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280755.10.0heat stress transcription factor A-4c isoform X1
RefseqXP_023633043.10.0heat stress transcription factor A-4c isoform X1
RefseqXP_023633050.10.0heat stress transcription factor A-4c isoform X1
SwissprotQ9FK720.0HFA4C_ARATH; Heat stress transcription factor A-4c
TrEMBLR0EXM70.0R0EXM7_9BRAS; Uncharacterized protein
STRINGXP_006280755.10.0(Capsella rubella)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.10.0HSF family protein
Publications ? help Back to Top
  1. Faragó D,Sass L,Valkai I,Andrási N,Szabados L
    PlantSize Offers an Affordable, Non-destructive Method to Measure Plant Size and Color in Vitro.
    Front Plant Sci, 2018. 9: p. 219
    [PMID:29520290]