PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10026903m
Common NameCARUB_v10026903mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 289aa    MW: 31444 Da    PI: 6.8822
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10026903mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.91.3e-14142186347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
  Carubv10026903m 142 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 186
                      8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.4093287IPR017884SANT domain
SMARTSM007171.4E-73385IPR001005SANT/Myb domain
CDDcd001674.77E-73682No hitNo description
SuperFamilySSF466897.69E-103689IPR009057Homeodomain-like
PROSITE profilePS5129420.772135191IPR017930Myb domain
SuperFamilySSF466896.89E-17137190IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-17138190IPR006447Myb domain, plants
SMARTSM007173.2E-13139189IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-12139186IPR009057Homeodomain-like
PfamPF002495.0E-13142186IPR001005SANT/Myb domain
CDDcd001671.70E-11142187No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MEVLRPTATS HVSGGNWLME ETKSNAGVTA SGEGCTWTAA ENKAFENALA VYDDNTPDRW  60
QKVAAVIPGK TVSDVIRQYN DLEADVSSIE AGLIPVPGYI TSPFTLDWAG GGGGGFKPGH  120
SVCNKRSSAG RSPELERKKG VPWTEEEHKL FLMGLKKYGK GDWRNISRNF VITRTPTQVA  180
SHAQKYFIRQ LSGGKDKRRA SIHDITTVNL EDEASLESNK SSIVVGEQRS RLTPFPWSQT  240
DNNGTHADAF NITIGNAISS VHPYGQVMLG GYNNADSCYD AQNTMFQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-1829102376RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00568DAPTransfer from AT5G58900Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10026903m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1188910.0AK118891.1 Arabidopsis thaliana At5g58900 mRNA for putative I-box binding factor, complete cds, clone: RAFL21-22-M07.
GenBankAY5195330.0AY519533.1 Arabidopsis thaliana MYB transcription factor (At5g58900) mRNA, complete cds.
GenBankBT0054730.0BT005473.1 Arabidopsis thaliana clone U51211 putative I-box binding factor (At5g58900) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280910.10.0transcription factor DIVARICATA
SwissprotQ8S9H71e-104DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLR0GRH60.0R0GRH6_9BRAS; Uncharacterized protein
STRINGXP_006280910.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122827100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.10.0Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]