PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10027037m
Common NameCARUB_v10027037mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 238aa    MW: 25441.6 Da    PI: 4.5258
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10027037mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.87.4e-1567116155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s ++G+r +  +g+Wv+eIr+p++   ++r++lg++  +e+Aa+a++ a+++l+g
  Carubv10027037m  67 SVFRGIRLR--NGKWVSEIREPRK---TTRIWLGTYPVPEMAAAAYDVAALALKG 116
                      689***975..6*********843...5************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.52E-1667124No hitNo description
SuperFamilySSF541713.86E-1767124IPR016177DNA-binding domain
PfamPF008479.0E-967116IPR001471AP2/ERF domain
SMARTSM003801.4E-2568130IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-2568124IPR001471AP2/ERF domain
PROSITE profilePS5103219.36168124IPR001471AP2/ERF domain
PRINTSPR003678.2E-66980IPR001471AP2/ERF domain
PRINTSPR003678.2E-6106126IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MSSTTNSPTT GNQETTVRQV SIALPSKPSD QSPQSSPSSS SSPRPCPLVP GGSPARRTTT  60
GLSGKHSVFR GIRLRNGKWV SEIREPRKTT RIWLGTYPVP EMAAAAYDVA ALALKGSDAV  120
LNFPGLALTY VAPVSNSAAD IRAAAGKAAE MKQPDPGEAE KVPEPGQPEK EEEVEVVEEE  180
GLCSLEFMDE EAMLNMPTLL TEMAEGMLMS PPRMMITPTV DDDSPENHQG DNLWSYK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1361124772Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10027037m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0154780.0AB015478.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSG15.
GenBankAK1764640.0AK176464.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL24-25-F17.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006281020.11e-173ethylene-responsive transcription factor ERF025
SwissprotQ9FJ901e-110ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLR0GRU91e-172R0GRU9_9BRAS; Uncharacterized protein
STRINGXP_006281020.11e-173(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134571424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.11e-89ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]