PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10027093m
Common NameCARUB_v10027093mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MIKC_MADS
Protein Properties Length: 221aa    MW: 25592.6 Da    PI: 9.747
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10027093mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.73.5e-29959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krien + rqvtfskRr g++KKA+ELSvLCda+va i+fs++g+lyeyss
  Carubv10027093m  9 KRIENVTSRQVTFSKRRSGLFKKAHELSVLCDAQVATIVFSQSGRLYEYSS 59
                     79***********************************************96 PP
2K-box67.54.4e-23851711197
            K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                      e+  ++l++e++++ k+i+ L+  qR+l+G++L+s+s+ eLq++ +q+eksl+ +RskK el+ +q+e+l++ e+el +e k+Lr++
  Carubv10027093m  85 ERYLQELKKEMDRMVKKIDLLEVHQRKLMGQGLGSCSVAELQEIDSQIEKSLRIVRSKKAELYADQLEKLKETERELLNERKRLREE 171
                      667899******************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.791161IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-40160IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-29323IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-32375IPR002100Transcription factor, MADS-box
CDDcd002651.33E-41375No hitNo description
PfamPF003192.1E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-293859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.95988179IPR002487Transcription factor, K-box
PfamPF014861.3E-2188171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MVRGKIEIKR IENVTSRQVT FSKRRSGLFK KAHELSVLCD AQVATIVFSQ SGRLYEYSSS  60
EMEKIIERYG KFSNDFSVAE RPQVERYLQE LKKEMDRMVK KIDLLEVHQR KLMGQGLGSC  120
SVAELQEIDS QIEKSLRIVR SKKAELYADQ LEKLKETERE LLNERKRLRE EQIRERLMRP  180
VVPQTLQICD KGKSEGSGCR TKHASEVETE LFIGLPVTRL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-20173173MEF2 CHIMERA
6byy_B1e-20173173MEF2 CHIMERA
6byy_C1e-20173173MEF2 CHIMERA
6byy_D1e-20173173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL42 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10027093m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1412200.0AY141220.1 Arabidopsis thaliana MADS-box protein AGL71 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006281070.11e-157MADS-box protein AGL71 isoform X1
RefseqXP_023643169.11e-157MADS-box protein AGL71 isoform X1
SwissprotQ9LT931e-119AGL71_ARATH; MADS-box protein AGL71
TrEMBLR0GS211e-156R0GS21_9BRAS; Uncharacterized protein
STRINGXP_006281070.11e-157(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51870.31e-124AGAMOUS-like 71