PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10027131m
Common NameCARUB_v10027131mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ZF-HD
Protein Properties Length: 211aa    MW: 24401.1 Da    PI: 10.063
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10027131mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer83.42.7e-2656109359
      ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                      k +Y +C+kNhAa +G++a+DGCgEf+ +++e   +++l+CaACgCHR+FHR  v+e
  Carubv10027131m  56 KPHYTKCMKNHAAGIGTTAYDGCGEFVVKTEE---KDSLNCAACGCHRDFHREVVSE 109
                      679*************************9444...7****************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047705.1E-2158106IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.2E-2458105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257748.0E-1659105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152322.16459106IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.605.9E-21145209IPR009057Homeodomain-like
SuperFamilySSF466893.76E-12147209IPR009057Homeodomain-like
TIGRFAMsTIGR015655.6E-30152208IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MDETTKPKKQ EDNKPKRRRN IKPICRESGD HVHYPPTHNK PKLKPKPSPI LKVTQKPHYT  60
KCMKNHAAGI GTTAYDGCGE FVVKTEEKDS LNCAACGCHR DFHREVVSET VLEVLKISSV  120
QFRRIFCSPY GGGNSKVKKE EIDGEELVGR VKRLKTKFTA EQTEKMREYA EKLRWKMKAE  180
VRNEVEEFCV EIGVNRKNFR IWMNNHKDKK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A6e-131512081774ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10027131m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0076473e-45AB007647.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJB21.
GenBankAY0843673e-45AY084367.1 Arabidopsis thaliana clone 105566 mRNA, complete sequence.
GenBankBT0028323e-45BT002832.1 Arabidopsis thaliana clone RAFL14-80-P06 (R20240) unknown protein (At5g42780) mRNA, complete cds.
GenBankBT0043793e-45BT004379.1 Arabidopsis thaliana clone U20240 unknown protein (At5g42780) mRNA, complete cds.
GenBankCP0026883e-45CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankLN8526593e-45LN852659.1 Arabidopsis thaliana mRNA for homeobox protein 27 (AtHB27 gene), ecotype Columbia.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006281101.11e-155zinc-finger homeodomain protein 13
SwissprotQ9FMY74e-93ZHD13_ARATH; Zinc-finger homeodomain protein 13
TrEMBLR0GBJ61e-154R0GBJ6_9BRAS; Uncharacterized protein
STRINGXP_006281101.11e-155(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM158881113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42780.14e-91homeobox protein 27