PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10027155m
Common NameCARUB_v10027155mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 203aa    MW: 22988.7 Da    PI: 8.7761
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10027155mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.00015104126123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++C + F ++  L  H++ H
  Carubv10027155m 104 FSCNYCQRKFYSSQALGGHQNAH 126
                      89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.94E-6101131No hitNo description
PROSITE profilePS5015711.094104131IPR007087Zinc finger, C2H2
PROSITE patternPS000280106126IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MSFEQTYAPL HLKYNAPQAQ TLQTNISHLS NFYFLSLSLS RFLFLSLSKH RVMDFQPNTS  60
LRLSLPSYKN HQLNLELVLE PSSMSSSSSS STNSSSCLEQ PRVFSCNYCQ RKFYSSQALG  120
GHQNAHKLER TLAKKSRELF RSSTTVDSDQ PYPFSGRFEL YGRGYEGFVE SGGSRDFSAR  180
RVPESGLDQD QEMSHLDLSL RL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of floral organ abscission. Participates in processes that directly or indirectly influence shedding of floral organs. {ECO:0000269|PubMed:18192438}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10027155m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0114820.0AB011482.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUA2.
GenBankATHZFPB0.0L39645.1 Arabidopsis thaliana zinc finger protein 2 (ZFP2) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006281125.11e-145zinc finger protein 2
SwissprotQ392613e-92ZFP2_ARATH; Zinc finger protein 2
TrEMBLR0GS961e-143R0GS96_9BRAS; Uncharacterized protein
STRINGXP_006281125.11e-144(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66212844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.12e-92zinc finger protein 2