PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10027158m

Common Name

CARUB_v10027158mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bHLH

Protein Properties

Length: 201aa MW: 22602.9 Da PI: 9.6533

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10027158m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.7	2e-08	29	80	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + h +Er+RR+++ f+ Lr++lP ++K ++ + Av +Ik+ q Carubv10027158m 29 KLLHRNIERQRRQEMAILFASLRSHLPLkY---IKGKRAMSDHVNGAVAFIKDTQ 80 567999********************77...9999999*********9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.25E-12	24	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.91E-8	25	84	No hit	No description
PROSITE profile	PS50888	11.109	27	79	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.2E-6	29	80	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-7	29	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MDPCNNPKKT RHQISHIPHV GDETKKEKKL LHRNIERQRR QEMAILFASL RSHLPLKYIK 60 GKRAMSDHVN GAVAFIKDTQ TRIQELSARR DELKREISDH TSQTRSGSGS SRSEPASVMV 120 QPCVSGFEVV VSSSASGLPL SRVLEVLHEQ GLEVISSLTA RVNERLMYTI QVEVNSFGCC 180 DLAWLQQKLI EELVLPTTRH *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10027158m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493789	0.0	AB493789.1 Arabidopsis thaliana At5g51790 mRNA for hypothetical protein, partial cds, clone: RAAt5g51790.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006281128.1	1e-147	transcription factor bHLH120 isoform X1
Swissprot	Q9FLI0	1e-115	BH120_ARATH; Transcription factor bHLH120
TrEMBL	R0EYP6	1e-146	R0EYP6_9BRAS; Uncharacterized protein
STRING	XP_006281128.1	1e-146	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2968	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51790.1	1e-115	bHLH family protein

Link Out ? help Back to Top
Phytozome	Carubv10027158m
Entrez Gene	17875905

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]