PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10027186m
Common NameCARUB_v10027186mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 193aa    MW: 21334 Da    PI: 8.8157
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10027186mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.61e-15128176153
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                      +++kGVr ++ +g+W AeI+dps    r r +lg+f tae+Aa+a+++a+  l
  Carubv10027186m 128 KKHKGVRKKP-SGKWSAEIWDPSL---RVRRWLGTFSTAEMAAQAYEEAAAGL 176
                      589****999.7*********954...4999******************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103218.044129186IPR001471AP2/ERF domain
SMARTSM003804.6E-22129191IPR001471AP2/ERF domain
PfamPF008476.9E-8129174IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-14129180IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.6E-19129180IPR001471AP2/ERF domain
PRINTSPR003671.2E-6130141IPR001471AP2/ERF domain
CDDcd000181.90E-13132161No hitNo description
PRINTSPR003671.2E-6152168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
QLVRPLCIQN LTPTSVSFAE VFAVEMNYLQ FDHTKNEYSE NIPSDDQTES LTHPRPSSSS  60
YLTRDQEHGI MVTALRQVIS NSGSDTSSNC IAGETLLSPD AGPCPLCGVT GCYGCAFRQG  120
REEIKKEKKH KGVRKKPSGK WSAEIWDPSL RVRRWLGTFS TAEMAAQAYE EAAAGLVGRR  180
LARRGERRSR KP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185191ERRSRKP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10027186m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5608814e-41AY560881.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At2g20350) mRNA, complete cds.
GenBankBT0246984e-41BT024698.1 Arabidopsis thaliana At2g20350 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006281152.21e-123ethylene-responsive transcription factor ERF120
SwissprotQ38Q402e-63EF122_ARATH; Ethylene-responsive transcription factor ERF122
TrEMBLR0GNY41e-141R0GNY4_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006281152.11e-142(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34721562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67000.13e-44ERF family protein