PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10027266m
Common NameCARUB_v10027266mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 164aa    MW: 18342.9 Da    PI: 6.6773
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10027266mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.52.1e-1764152197
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f+k +++s+v+   +l lp +f+++h gk+ +   +tl +e+g ++e  +  r+++    l++GW +F+ a++L  gD++vF+l++ + f  +v
  Carubv10027266m  64 FVKSMLQSHVSGGFWLGLPVHFCRSHLGKHDG--VITLINEEGDEYETVYLARRTG----LSGGWMGFAVAHNLAYGDTLVFELISPTAF--KV 149
                      89************************666544..7***************555555....************************997777..66 PP

                      EEE CS
               B3  95 kvf 97 
                       + 
  Carubv10027266m 150 YIT 152
                      554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.86E-2458153IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-1958153IPR015300DNA-binding pseudobarrel domain
CDDcd100171.38E-2562153No hitNo description
PfamPF023621.4E-1464152IPR003340B3 DNA binding domain
SMARTSM010198.6E-2564155IPR003340B3 DNA binding domain
PROSITE profilePS5086312.26664155IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MNLRVFCLVL VLQVDVERVQ IRRRGVSKRR DLSNRVYVSE EVRDDAIARA EKFQADLGSD  60
YPSFVKSMLQ SHVSGGFWLG LPVHFCRSHL GKHDGVITLI NEEGDEYETV YLARRTGLSG  120
GWMGFAVAHN LAYGDTLVFE LISPTAFKVY ITRVESSGES SEI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10027266m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023644176.11e-108B3 domain-containing protein At5g42700
SwissprotQ9FMZ42e-88Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBLR0GJY31e-116R0GJY3_9BRAS; Uncharacterized protein
STRINGXP_006279707.11e-117(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37442759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.11e-90B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]