PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10027529m
Common NameCARUB_v10027529mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MIKC_MADS
Protein Properties Length: 223aa    MW: 26097.1 Da    PI: 7.9553
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10027529mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.61.6e-28959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krien + rqvtfskR++g+lKKA+ELSvLCda+va iifs++gkly+++s
  Carubv10027529m  9 KRIENLTSRQVTFSKRKKGLLKKAHELSVLCDAQVAAIIFSQKGKLYDFAS 59
                     79***********************************************86 PP
2K-box46.81.3e-1683157983
            K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 
                      + e+  + l++e++ + ++i+ Lq   R+l+G+dL+s s+ eL+++  qLeksl+ +Rs+K +l  +++e+l + 
  Carubv10027529m  83 QREKYVQDLKKEISVMVNRIDLLQLHCRKLMGQDLDSSSVDELKEITIQLEKSLTIVRSRKAKLNEDEVEKLEEE 157
                      56788899****************999*****************************************9988654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.034161IPR002100Transcription factor, MADS-box
SMARTSM004322.7E-40160IPR002100Transcription factor, MADS-box
CDDcd002655.29E-38268No hitNo description
SuperFamilySSF554554.19E-30372IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-28323IPR002100Transcription factor, MADS-box
PfamPF003197.4E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.2E-1587172IPR002487Transcription factor, K-box
PROSITE profilePS5129711.72688183IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MARKKIEIKR IENLTSRQVT FSKRKKGLLK KAHELSVLCD AQVAAIIFSQ KGKLYDFASS  60
NMEKMMERCE IYRREYFSAE RFQREKYVQD LKKEISVMVN RIDLLQLHCR KLMGQDLDSS  120
SVDELKEITI QLEKSLTIVR SRKAKLNEDE VEKLEEEIEG ERELLNERPR LHLHEMFEEK  180
PLWMQSRSLD NEKSAASCGY GNMNTSDVET DLFIGLPQSR ML*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A1e-19166166MEF2 CHIMERA
6bz1_B1e-19166166MEF2 CHIMERA
6bz1_C1e-19166166MEF2 CHIMERA
6bz1_D1e-19166166MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL42 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10027529m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006281451.11e-162MADS-box protein AGL71
SwissprotQ9LT937e-76AGL71_ARATH; MADS-box protein AGL71
TrEMBLR0GCF91e-161R0GCF9_9BRAS; Uncharacterized protein
STRINGXP_006281451.11e-161(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88051235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51870.17e-68AGAMOUS-like 71