PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10027579m

Common Name

CARUB_v10027579mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

Nin-like

Protein Properties

Length: 278aa MW: 32122.2 Da PI: 5.9686

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10027579m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	82.5	4.2e-26	158	207	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++s e++++yF++pi++AAkeL++++T+LK++CR++GI+RWPhRk++sl Carubv10027579m 158 NSVSREMMKQYFYMPIAKAAKELNIGVTLLKKKCRELGIPRWPHRKLSSL 207 57899******************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.917	143	227	IPR003035	RWP-RK domain
Pfam	PF02042	1.7E-21	160	207	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MADQNPLMIW SEANNYDSFL QEDIFSFLDQ SLLIDQNSFI NPFKDIETES WFSSQDSIVN 60 PYSTTLAADH TFLASFDLEA ISSTFSLDVL SGLWNMESNG NYNNQVEPIQ DDRSRSTNSM 120 GDPNMEKISN EDDNRIKETT NQKRIIMKRR NREDGVINSV SREMMKQYFY MPIAKAAKEL 180 NIGVTLLKKK CRELGIPRWP HRKLSSLNTL ITNLKESLQN TEGETNKSKL RDALEILEKE 240 KKMIEEVPDL EFGNKTKRLR QACFKANYKR RRVFSSS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	268	272	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10027579m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB026640	1e-102	AB026640.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K8A10.
GenBank	CP002688	1e-102	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006281487.1	0.0	protein RKD3
Swissprot	Q9FGD1	1e-150	RKD3_ARATH; Protein RKD3
TrEMBL	R0GPV5	0.0	R0GPV5_9BRAS; Uncharacterized protein
STRING	XP_006281487.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12180	19	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	1e-142	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Carubv10027579m
Entrez Gene	17875404

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]