PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10027643m
Common NameCARUB_v10027643mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HSF
Protein Properties Length: 107aa    MW: 12140.6 Da    PI: 7.5145
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10027643mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind52.31.6e-16175991
                     HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
     HSF_DNA-bind  9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91
                     +++d+++++++sws ng+sf+v++e+ef ++vLp++   +++a F+R L   gFkk++++++        we+  ++F +g+ 
  Carubv10027643m  1 MVDDPSTDSVVSWSGNGKSFIVWNESEFCRDVLPRFSHYKEMAPFIRRLGNMGFKKIESSDQ--------WEYGSDNFLRGHP 75
                     89*********************************9999*******************9994........9999999999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.0E-14187IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.5E-16176IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.35E-19176IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.6E-21176IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MVDDPSTDSV VSWSGNGKSF IVWNESEFCR DVLPRFSHYK EMAPFIRRLG NMGFKKIESS  60
DQWEYGSDNF LRGHPEPNLP PDAVRARLKE LALASKKGQA DPSFYR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10027643m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010453361.11e-24PREDICTED: heat stress transcription factor A-4a-like
RefseqXP_023879311.16e-24heat stress transcription factor A-4a-like
TrEMBLR0GQ122e-73R0GQ12_9BRAS; Uncharacterized protein
STRINGXP_006281542.14e-74(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18870.13e-21HSF family protein