PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10027854m
Common NameCARUB_v10027854mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ARR-B
Protein Properties Length: 299aa    MW: 34030.4 Da    PI: 5.7837
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10027854mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like66.64.3e-21231279251
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                       r++W +eLH+rF++av++  G ekA+Pk+ile m+v+ L++e+v+SHLQ
  Carubv10027854m 231 RRVVWDTELHQRFLDAVNSV-GFEKAVPKKILEQMNVENLSRENVASHLQ 279
                      69******************.9**************************** PP
2Response_reg37.41.3e-13461541108
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH.H CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal.k 91 
                      vl+ d++p+ + +l++ l+  +y +v+++ + +ea++ll++++  +D+ ++  + ++ d +++++ei +e  ++  i+++  ++ e +++ +  
  Carubv10027854m  46 VLVFDEDPAYLLILERHLQAFRY-RVTTCNEESEAMTLLRDHRnmFDIAMIHANNSDGDRIRFISEIGSEM-DISFIIISKDDSVESVVKWMsT 137
                      7999*******************.*****************999***********************7755.8***********9999999977 PP

                      TTESEEEESS--HHHHH CS
     Response_reg  92 aGakdflsKpfdpeelv 108
                        a d+l Kp+ pe+l+
  Carubv10027854m 138 TTACDYLIKPIRPEDLR 154
                      88*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.28E-1942172IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.4E-1843184No hitNo description
SMARTSM004480.003544157IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011023.47545161IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.7E-746155IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.78E-647165No hitNo description
Gene3DG3DSA:1.10.10.601.7E-20227279IPR009057Homeodomain-like
PROSITE profilePS5129410.459227286IPR017930Myb domain
SuperFamilySSF466894.66E-14228283IPR009057Homeodomain-like
TIGRFAMsTIGR015573.8E-22231283IPR006447Myb domain, plants
PfamPF002497.6E-6232279IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MDYPPMAVTF DHGGVPASDG GGDPFGDQHP NFSDVFPRNF PESLRVLVFD EDPAYLLILE  60
RHLQAFRYRV TTCNEESEAM TLLRDHRNMF DIAMIHANNS DGDRIRFISE IGSEMDISFI  120
IISKDDSVES VVKWMSTTTA CDYLIKPIRP EDLRMIFKHV VKKFLGRRRS VVTVEGDQEK  180
AAAREKSSSV GDSTIRSPDD DQAGKRSSCP NAEVVNEEDH DHDRVTSKKR RRVVWDTELH  240
QRFLDAVNSV GFEKAVPKKI LEQMNVENLS RENVASHLQV TFLLVYTTHI IIMFNNNK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-16226279154ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228232KRRRV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10027854m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023633365.10.0putative two-component response regulator-like APRR4
SwissprotQ9FJ161e-115APRR4_ARATH; Putative two-component response regulator-like APRR4
TrEMBLR0EZ820.0R0EZ82_9BRAS; Uncharacterized protein
STRINGXP_006281704.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132221624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49240.11e-109pseudo-response regulator 4