PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10027920m

Common Name

CARUB_v10027920mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bHLH

Protein Properties

Length: 294aa MW: 33463.9 Da PI: 9.2872

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10027920m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.9	7.4e-13	101	152	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ L++ +P + +s+ + a+i e +++Y+k+L+ Carubv10027920m 101 QRMNHIAIERNRRRQMNHFLSVLKSSMPLS---YSQPCDQASIIEGTINYVKKLE 152 79**************************...*****************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.61E-11	98	156	No hit	No description
SuperFamily	SSF47459	1.44E-16	99	167	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.831	100	151	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-10	101	152	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.8E-13	101	165	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-7	106	157	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MMFQQEYPYG FSLVESSLNY EILDFFQNMV FSNSEDLKSS QQNNSLSSTT LSCSIAEQQS 60 YSTQNLSSLR PRCGSSADNV PPRKRTRTTR SDKKIEDKEN QRMNHIAIER NRRRQMNHFL 120 SVLKSSMPLS YSQPCDQASI IEGTINYVKK LEQLLQSLEA QSKATKPNES PNIFSSFFMF 180 PQYSTATASS FSSSHHHQKK LTAVADVEVT MVERHANIKV LTKTRPRLLF KMINEFYSLG 240 LSTLHLNLTT YKSKDMSLFT FGVKVEASCQ LTPSINEIAN AVHEVVRRIH EES*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	101	112	RMNHIAIERNRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10027920m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006281758.1	0.0	transcription factor bHLH99
Swissprot	Q9FKQ6	1e-131	BH099_ARATH; Transcription factor bHLH99
TrEMBL	R0F081	0.0	R0F081_9BRAS; Uncharacterized protein
STRING	XP_006281758.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14959	16	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65320.1	1e-120	bHLH family protein

Link Out ? help Back to Top
Phytozome	Carubv10027920m
Entrez Gene	17877280

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]