PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10027922m

Common Name

CARUB_v10027922mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

Nin-like

Protein Properties

Length: 84aa MW: 9712.75 Da PI: 10.8518

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10027922m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	71.2	1.4e-22	2	41	13	52
RWP-RK 13 yFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 F+lpi+ AAk++++c+TvLK+iCR+ ++RWPhRkiksl Carubv10027922m 2 LFHLPIETAAKQMNICPTVLKKICRKGSLMRWPHRKIKSL 41 6*************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.289	1	62	IPR003035	RWP-RK domain
Pfam	PF02042	8.6E-20	2	41	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 84 aa Download sequence Send to blast
MLFHLPIETA AKQMNICPTV LKKICRKGSL MRWPHRKIKS LQTKIMSLKK LHTAAKDDEV 60 NVEIERLQRR IDKICSDALK NMK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10027922m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006281616.2	1e-51	uncharacterized protein LOC17875321
TrEMBL	R0GU10	2e-53	R0GU10_9BRAS; Uncharacterized protein
STRING	XP_006281760.1	4e-54	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4076	23	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	4e-13	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Carubv10027922m
Entrez Gene	17874839