PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10028041m

Common Name

CARUB_v10028041mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bZIP

Protein Properties

Length: 205aa MW: 23789.7 Da PI: 6.9223

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10028041m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	45.7	1.4e-14	68	128	3	63
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e +r+rr+ +NRe+ArrsR RKk++ieeL++ v++L N+ L +++ +l + ++ +e+ Carubv10028041m 68 EERRARRMVSNRESARRSRMRKKKQIEELQQQVEQLMMLNHHLSEKVINLLESNHQVLQEN 128 678********************************************99999999998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.8E-15	66	130	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.1E-12	68	128	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.3	68	131	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.3E-12	70	126	No hit	No description
SuperFamily	SSF57959	3.44E-11	70	121	No hit	No description
CDD	cd14702	2.67E-17	71	122	No hit	No description
PROSITE pattern	PS00036	0	73	88	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MEPGVHRSHC FDILDGVPPQ DDHFNSAFLS NTDFSVQLQS VSTRSNNHQS QLDPNALNIF 60 HHEALAPEER RARRMVSNRE SARRSRMRKK KQIEELQQQV EQLMMLNHHL SEKVINLLES 120 NHQVLQENSQ LKEKVSSFHL LMADVLLPMR NAESNINDRN VNLLRGETSN RPTNSPFASS 180 TMIDPYMFDF YTAITYLHLY IDYR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10028041m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB015472	0.0	AB015472.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MAE1.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006281849.2	1e-139	LOW QUALITY PROTEIN: basic leucine zipper 43
TrEMBL	R0EZJ9	1e-148	R0EZJ9_9BRAS; Uncharacterized protein
STRING	Cagra.2519s0054.1.p	1e-149	(Capsella grandiflora)
STRING	XP_006281849.1	1e-149	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6185	25	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60830.1	2e-88	basic leucine-zipper 70

Link Out ? help Back to Top
Phytozome	Carubv10028041m
Entrez Gene	17876337