PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10028105m
Common NameCARUB_v10028105mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family M-type_MADS
Protein Properties Length: 330aa    MW: 36457.4 Da    PI: 4.1055
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10028105mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF25.32e-0824511239
                     HHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
           SRF-TF 12 tfskRrngilKKAeELSvLCdaevavii 39
                      fskRr+g+  KA  L+ L +a+vav+ 
  Carubv10028105m 24 AFSKRREGLYSKAAQLCLLSGAQVAVLA 51
                     7*************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006611.774550IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-4568IPR002100Transcription factor, MADS-box
CDDcd002662.69E-18685No hitNo description
SuperFamilySSF554551.44E-11779IPR002100Transcription factor, MADS-box
PfamPF003194.9E-81556IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MVKRGTKTKI AIKTITKKSS IGPAFSKRRE GLYSKAAQLC LLSGAQVAVL ATPLSSESNV  60
SFYSFGHSSV DGVVSAFLSG QRPVSVPSLD DDKEMREDVG ICLTRKNLGL GFWWQNESVV  120
RSENPQEISK AIDSMWTLLS NLKELRAEEA FFSNHEDLKN NNEKSGVVLD RVTQEPDQTL  180
THLQSPICCI VPDQSTSPDD SLIADTAFTD DSPADINEIT EEQDQILALC ESFCVTDNNN  240
NNKGSTEVSL DYNQELGIDQ LIDFDTEFES SLDDWFSNNT HQEKETTASV LTNSESGYDD  300
NVLMKTMNPN LFSEFEALQD GNLMLEMFG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10028105m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006281901.10.0agamous-like MADS-box protein AGL97
TrEMBLR0GDK70.0R0GDK7_9BRAS; Uncharacterized protein
STRINGXP_006281901.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38620.11e-116M-type_MADS family protein