PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10028199m
Common NameCARUB_v10028199mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family EIL
Protein Properties Length: 557aa    MW: 63755.6 Da    PI: 4.6199
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10028199mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3453.51.7e-138394421353
                      XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.....XXXXXXX.........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
             EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaa....tgakksn.........ksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekg 81 
                      ++lkkrmwkd++l+++lk++k+++ ++  ++    t+              ++ e++rrkkm+r+QD++LkYM+k+mevc+aqGfvYgi+pekg
  Carubv10028199m  39 DDLKKRMWKDRNLMCKLKQQKRDNHNSVISSpsssTS----AssssssaivRRAEASRRKKMARSQDSVLKYMMKIMEVCKAQGFVYGIVPEKG 128
                      79********************987554443333333....1445589999******************************************* PP

                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH CS
             EIN3  82 kpvegasdsLraWWkekvefdrngpaaisky...qaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPW 172
                      kpv+g+sdsLr+WWke+v+fd+++p+a+s+y   +a++li+s+es +   ++s+ h+l+elqDTtlgSLLsalmqhc ppqrrfplekg++pPW
  Carubv10028199m 129 KPVTGSSDSLRRWWKENVQFDQTAPNAVSDYltlAAAQLISSNESLD---PNSYIHMLHELQDTTLGSLLSALMQHCVPPQRRFPLEKGLAPPW 219
                      *********************************999****9988877...99****************************************** PP

                      ---S--HHHHHHT.--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX.. CS
             EIN3 173 WPtGkelwwgelg.lskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsah.. 263
                      WP+G+elwwge+g ++ ++g+ppy+kphdl+kawkvsvL+avikhmsp++e++r+l+rqsk+lqdkm+ake++++++vlnqee+ +++++ +  
  Carubv10028199m 220 WPNGTELWWGEQGaAAFEHGPPPYRKPHDLRKAWKVSVLAAVIKHMSPNLERVRRLARQSKCLQDKMMAKETDTWSRVLNQEEARLNRLKISdg 313
                      *************9999999*********************************************************************99954 PP

                      XXXXXXXXXXXXXXXXXXXXXX......XXXXXX.XXXXXXXXXX....................................XXXXXXXXXXXXX CS
             EIN3 264 ssslrkqspkvtlsceqkedve......gkkeskikhvqavktta....................................gfpvvrkrkkkps 315
                        +  +q+p+ + s +q+   +      +++e    +++++k+ +                                    ++p+ +krk +++
  Carubv10028199m 314 EDEDPDQEPARFTSFDQESSLNtcflvaQDQELA-GSMRKDKRVDqessqddcflavqdqerrkekradqewspnacflvdQEPFGNKRKGEFV 406
                      2233447777777777776666799984444444.56777777778888999999*************************************** PP

                      XXXXXXXX......XXXXXXX.XXXXXXXXXXXXXXXX CS
             EIN3 316 esakvsskevsrtcqssqfrgsetelifadknsisqne 353
                      e++++ sk  ++tcq+ ++++s+++l+f dkn ++ +e
  Carubv10028199m 407 EQEAMLSK--VYTCQNVSCPSSDVSLGFVDKNLRTGHE 442
                      ******99..7************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048737.4E-12539302No hitNo description
Gene3DG3DSA:1.10.3180.101.2E-67178309IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167681.96E-58180305IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MVEVQDLEPL SPIQDEDDDD FVEEGEDEFD RFGEDISYDD LKKRMWKDRN LMCKLKQQKR  60
DNHNSVISSP SSSTSASSSS SSAIVRRAEA SRRKKMARSQ DSVLKYMMKI MEVCKAQGFV  120
YGIVPEKGKP VTGSSDSLRR WWKENVQFDQ TAPNAVSDYL TLAAAQLISS NESLDPNSYI  180
HMLHELQDTT LGSLLSALMQ HCVPPQRRFP LEKGLAPPWW PNGTELWWGE QGAAAFEHGP  240
PPYRKPHDLR KAWKVSVLAA VIKHMSPNLE RVRRLARQSK CLQDKMMAKE TDTWSRVLNQ  300
EEARLNRLKI SDGEDEDPDQ EPARFTSFDQ ESSLNTCFLV AQDQELAGSM RKDKRVDQES  360
SQDDCFLAVQ DQERRKEKRA DQEWSPNACF LVDQEPFGNK RKGEFVEQEA MLSKVYTCQN  420
VSCPSSDVSL GFVDKNLRTG HEIECLYGNQ EPMNHSSGGS DGFVRSMTTS DDDYSASSRA  480
EDTREYHYQD GNWLDYLWFE RLHDLNCSDQ GFEDHTNTVD LNQLPDHSDS KQTMNEEVFS  540
LWDMGCEDKD IYMSQD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A1e-561783081130Protein ETHYLENE INSENSITIVE 3
4zds_B1e-561783081130Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10028199m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0133950.0AB013395.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQN23.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006281975.10.0ETHYLENE INSENSITIVE 3-like 5 protein
SwissprotQ9FJQ50.0EIL5_ARATH; ETHYLENE INSENSITIVE 3-like 5 protein
TrEMBLR0GUK90.0R0GUK9_9BRAS; Uncharacterized protein
STRINGXP_006281975.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58792747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65100.10.0EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]