PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10028209m
Common NameCARUB_v10028209mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 250aa    MW: 27838.1 Da    PI: 7.0642
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10028209mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.5e-2093143255
              AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+++AeIrdp   + k  r++lg+++t  eAa+a+++a+ kl+g
  Carubv10028209m  93 HYRGVRRRP-WGKYAAEIRDP---NkKGSRIWLGTYDTSLEAARAYDQAAFKLRG 143
                      7********.**********9...4345*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.1E-3292151IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-2393153IPR016177DNA-binding domain
SMARTSM003801.1E-3693157IPR001471AP2/ERF domain
PROSITE profilePS5103224.89593151IPR001471AP2/ERF domain
PfamPF008477.7E-1593143IPR001471AP2/ERF domain
CDDcd000185.35E-3193151No hitNo description
PRINTSPR003672.2E-1394105IPR001471AP2/ERF domain
PRINTSPR003672.2E-13133153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MATKQESSAI EFISQHLLTD FANSMETKVS CFTFHESEPS LSTNQAHSLH SETTNQSPRP  60
NTTLNRRKPP LQNLSVPRTV STKTEKTEEE ERHYRGVRRR PWGKYAAEIR DPNKKGSRIW  120
LGTYDTSLEA ARAYDQAAFK LRGRKAILNF PLDVRVTSET CFEEGVVGLG KRKRIKSSPP  180
EEEKEARVKV EEEESSTITS SDTMGAEVET VPLTPSSWMG FWDVGAGDGI FSIPPLSPTS  240
PNFSVISVT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2792154163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A2e-27901581179Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00572DAPTransfer from AT5G61600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10028209m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0886940.0AY088694.1 Arabidopsis thaliana clone 92102 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006281978.10.0ethylene-responsive transcription factor ERF104
SwissprotQ9FKG11e-124EF104_ARATH; Ethylene-responsive transcription factor ERF104
TrEMBLR0F0T30.0R0F0T3_9BRAS; Uncharacterized protein
STRINGXP_006281978.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134641828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61600.11e-115ethylene response factor 104
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Moore M,Vogel M,Dietz K
    The acclimation response to high light is initiated within seconds as indicated by upregulation of AP2/ERF transcription factor network in Arabidopsis thaliana.
    Plant Signal Behav, 2014. 9(10): p. 976479
    [PMID:25482793]