PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10028317m

Common Name

CARUB_v10028317mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

Nin-like

Protein Properties

Length: 248aa MW: 28877.1 Da PI: 8.2861

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10028317m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	82.5	4e-26	136	186	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++++++++++++F+ pi +AAkeL+v+lTvLK++CR++GI RWPhRk+ksl Carubv10028317m 136 QDKLEMDEIKQFFDRPIMKAAKELNVGLTVLKKRCRELGIYRWPHRKLKSL 186 6799*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.03	122	207	IPR003035	RWP-RK domain
Pfam	PF02042	1.5E-21	139	186	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
STLYSVLLLS SLILQQMDPN SLRRLDSPKI KKEYEPDSFY DMLDTLPPLN SLLDIEDLKP 60 NPGLHFEFQY TSFEDFFKNM EVDNIISSDI QMSSTQEPYV SSESSSPLAV ENDCLSSNER 120 CEKRIVKKRN SKKKRQDKLE MDEIKQFFDR PIMKAAKELN VGLTVLKKRC RELGIYRWPH 180 RKLKSLNSLI KNLKSVGMED EVKNLEEHRV LIEQEPDAEL SDGTKKLRQA CFKANYKKRK 240 SLAHDYY*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10028317m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006282071.2	0.0	protein RKD4
Swissprot	Q9LVU8	1e-124	RKD4_ARATH; Protein RKD4
TrEMBL	R0GE40	1e-180	R0GE40_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_006282071.1	1e-180	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12585	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	1e-108	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Carubv10028317m
Entrez Gene	17876468

Publications ? help Back to Top
Azpeitia E,Davila-Velderrain J,Villarreal C,Alvarez-Buylla ER Gene regulatory network models for floral organ determination. Methods Mol. Biol., 2014. 1110: p. 441-69 [PMID:24395275]