PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10028442m
Common NameCARUB_v10028442mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 152aa    MW: 17682.2 Da    PI: 9.1984
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10028442mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM68.81.5e-2161336127
              NAM   6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekew...yfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                       F+P d+el+  yL++k+++++ +    ikevd++k+eP+d++      ++e e        ++ + + + + ++r+ k+g Wk tg+++ v++
  Carubv10028442m   6 TFNPFDHELI-AYLNRKITEEEDKD---IKEVDLCKHEPEDIKeVdL-CKHEPEDipgKLNLRTCSLNGRLQLTKRSCKTGNWKITGRTTFVKN 94 
                      5*********.9********99544...8999999999999973332.222222212233334444445667899999**************** PP

              NAM  95 kkgelvglkktLvfy.......kgrapkgektdWvmheyr 127
                       +++++g kk Lvfy       + r+pk  k+dWvmhey+
  Carubv10028442m  95 VNDKTIGYKKYLVFYlngdkssSTRTPK-IKSDWVMHEYS 133
                      ***************8666543334444.59********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100519.9391151IPR003441NAC domain
PfamPF023652.5E-136133IPR003441NAC domain
SuperFamilySSF1019411.15E-216139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MSDQHTFNPF DHELIAYLNR KITEEEDKDI KEVDLCKHEP EDIKEVDLCK HEPEDIPGKL  60
NLRTCSLNGR LQLTKRSCKT GNWKITGRTT FVKNVNDKTI GYKKYLVFYL NGDKSSSTRT  120
PKIKSDWVMH EYSSCIRHSK KVRTIHKIIN S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10028442m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023633377.17e-90NAC domain-containing protein 62
TrEMBLR0GRW61e-107R0GRW6_9BRAS; Uncharacterized protein
STRINGXP_006282177.11e-108(Capsella rubella)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04430.11e-16NAC domain containing protein 49