PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10028472m
Common NameCARUB_v10028472mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 279aa    MW: 31562.2 Da    PI: 4.7425
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10028472mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.55e-21134184255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+++AeIrdp+++g   r++lg+f+ta eAa+a+++a+ +l+g
  Carubv10028472m 134 HYRGVRQRP-WGKFAAEIRDPNKRG--SRVWLGTFDTAIEAARAYDQAAFRLRG 184
                      69*******.**********96655..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.49E-31133192No hitNo description
PfamPF008474.1E-15134184IPR001471AP2/ERF domain
PROSITE profilePS5103224.421134192IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-33134193IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-23134194IPR016177DNA-binding domain
SMARTSM003802.7E-37134198IPR001471AP2/ERF domain
PRINTSPR003679.5E-11135146IPR001471AP2/ERF domain
PRINTSPR003679.5E-11158174IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MATPNEVSAL WFIEKHLLDD LSPVATTHEP PPASESSSDS CFSDSQIIDL DTPRFVDFIL  60
HSDISLSDFD FKPTHQNQYQ NQNQVEPEIN NSQIRKPPLK IALPAKTEWI QFVAEDLNPK  120
PEVTKPEVEE KKQHYRGVRQ RPWGKFAAEI RDPNKRGSRV WLGTFDTAIE AARAYDQAAF  180
RLRGSKAILN FPLEVGKWKP RADEPTENKR KRDNDGDDDD EKATLVEKAL KTEQNVDGDG  240
GETFPLYTDW DLTGFLNFPL LSPLSPHPSF GYSQLTVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-31131195266ATERF1
3gcc_A3e-31131195266ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10028472m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006282206.10.0ethylene-responsive transcription factor 5
SwissprotO803411e-133EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLR0GEF70.0R0GEF7_9BRAS; Uncharacterized protein
STRINGXP_006282206.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.11e-104ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]