PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10028616m
Common NameCARUB_v10028616mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 316aa    MW: 34654 Da    PI: 9.6124
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10028616mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.33.7e-13108153247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++WT+eE+  ++ + ++lG+g+W+ Ia+ + ++Rt+ q+ s+ qky
  Carubv10028616m 108 KPWTEEEHRNFLIGLNKLGKGDWRGIAKGFVTTRTPTQVASHAQKY 153
                      58*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.6641225IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129418.143102158IPR017930Myb domain
SuperFamilySSF466891.64E-16104158IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-16105156IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.8E-10106152IPR009057Homeodomain-like
SMARTSM007175.2E-10106156IPR001005SANT/Myb domain
PfamPF002493.5E-11108153IPR001005SANT/Myb domain
CDDcd001677.43E-9109154No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MVKETVTTAK TCSQCGHNGH NARTCLSGVN KGSVKLFGVN ISPDPIRSPE GTALRKSLSL  60
GNLDTFLSND DSNGSGDPIA AVEDTGYHSD GQIHSKKCKT DHDKKKGKPW TEEEHRNFLI  120
GLNKLGKGDW RGIAKGFVTT RTPTQVASHA QKYFIRLNVN DKRKRRASLF DISLEDQKEK  180
ERNSQNASTP KTPALTGVSQ QPVVQGQTQT EISNRFQNLS MEYMPVYQTV PPYYNFPPLM  240
FHPMYYANPE QIRFVHPSGI PVPRHVPMGM PQSQPNEANS SVSNKDGLEL GIGLPPPPQA  300
TGTTDLTGHG VIHVK*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00573DAPTransfer from AT5G61620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10028616m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0122395e-91AB012239.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K11J9.
GenBankCP0026885e-91CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006282324.10.0probable transcription factor At5g61620
SwissprotQ9FKF90.0M5162_ARATH; Probable transcription factor At5g61620
TrEMBLR0F0T90.0R0F0T9_9BRAS; Uncharacterized protein
STRINGXP_006282324.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60212747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.10.0MYB_related family protein
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]