PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10028625m

Common Name

CARUB_v10028625mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bHLH

Protein Properties

Length: 227aa MW: 25538.9 Da PI: 7.0579

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10028625m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.3	2.1e-11	151	191	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ +L++l+P+ +K++ +++Le Av+Y+k Lq Carubv10028625m 151 RKRRERINDRLKTLQSLVPNG-----TKVDISTMLEDAVHYVKFLQ 191 9****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.831	141	190	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.27E-14	146	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.4E-12	147	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-12	147	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.55E-12	150	195	No hit	No description
Pfam	PF00010	7.8E-9	151	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MENEAFVVDG ELESLLGIFN FEQCSSNESI FYNAPHSETD AYSSDDFFPF GTILQRNYPA 60 VLDGSNFQTN LYVDSRQELM KPRKKQKLSS ESILVVTEPK STSRDGQTLS SYNCSDDEKA 120 LGLVAYTSRN LKGKAKSKKG IASDPQSLYA RKRRERINDR LKTLQSLVPN GTKVDISTML 180 EDAVHYVKFL QLQIKLLSSD DLWMYAPLAH NGLNMGLHHN LLSRLM*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10028625m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB023030	2e-55	AB023030.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K24F5.
GenBank	CP002688	2e-55	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006282332.1	1e-168	transcription factor bHLH139
Swissprot	Q3E7L7	1e-136	BH139_ARATH; Transcription factor bHLH139
TrEMBL	R0GSB0	1e-167	R0GSB0_9BRAS; Uncharacterized protein
STRING	XP_006282332.1	1e-168	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4132	22	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43175.1	1e-115	bHLH family protein

Link Out ? help Back to Top
Phytozome	Carubv10028625m
Entrez Gene	17874597

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]