PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10028638m
Common NameCARUB_v10028638mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HSF
Protein Properties Length: 349aa    MW: 39937.9 Da    PI: 5.3721
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10028638mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.16.7e-34711632103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k++ei++d  ++ ++sws++ +sf+++d+ ef++++LpkyFkh+nf+SF+RQLn+YgFkkv++++         weF+++ F+ gkk+ll+
  Carubv10028638m  71 FLRKTFEIVDDVVTDPVVSWSSTRKSFIIWDSYEFSENLLPKYFKHKNFSSFIRQLNTYGFKKVDSDR---------WEFANEGFQGGKKHLLK 155
                      9****************************************************************999.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                      +ikr++s+
  Carubv10028638m 156 NIKRRRSK 163
                      *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.5E-5067160IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.04E-3068160IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.9E-3469160IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.3E-177194IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.0E-2971160IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.3E-17109121IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340110134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.3E-17122134IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MTVVPDVADI ESSSSLGQET ATETVKDGQT RSEGSSDDVV SLTEDDAVNL NDSSSSVGFW  60
KLHEIGLITP FLRKTFEIVD DVVTDPVVSW SSTRKSFIIW DSYEFSENLL PKYFKHKNFS  120
SFIRQLNTYG FKKVDSDRWE FANEGFQGGK KHLLKNIKRR RSKTNCNKEA SITGLRTETE  180
VELLKEEQSP MRLEMLKLKQ QHEESQHQMV TVQEKIQGVE LEQRHMLSFF AKLAKDQRYV  240
ERLVRKRKMK QQRELEANEF VKKLKLLQDQ ETEKNLGDVD QSNLIIREFM AMAATQRDHD  300
SDISMNNQSG NTRCQLNTED LLVDVGSMGG NKTDVDVNVD VGVNVRIE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-206816026129Heat shock factor protein 1
5d5v_B7e-206816026129Heat shock factor protein 1
5d5v_D7e-206816026129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153159LKNIKRR
Functional Description ? help Back to Top
Source Description
UniProtSeed-specific transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). Seems to be specialized for the developmental expression of heat shock protein (HSP) genes during seed maturation. Activated by ABI3. {ECO:0000269|PubMed:17220197}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10028638m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0652260.0AY065226.1 Arabidopsis thaliana unknown protein (At5g54070) mRNA, complete cds.
GenBankAY0965520.0AY096552.1 Arabidopsis thaliana unknown protein (At5g54070) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006282343.10.0heat stress transcription factor A-9
SwissprotQ9LVW21e-174HSFA9_ARATH; Heat stress transcription factor A-9
TrEMBLR0F1R40.0R0F1R4_9BRAS; Uncharacterized protein
STRINGXP_006282343.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74981940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54070.11e-176heat shock transcription factor A9