PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc00_g01120

Common Name

GSCOC_T00019002001, GSCOC_T00033971001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

HB-other

Protein Properties

Length: 166aa MW: 19098.6 Da PI: 6.6823

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc00_g01120	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.6	1.8e-17	27	76	6	55
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 +++++q+++Le++F+ +++p+++e+++L+++lgL+ q+k+WFqN+R + Cc00_g01120 27 RHSAQQIQRLEAFFKTSQHPTKDEKQQLSTELGLSSGQIKFWFQNKRNQI 76 6899*******************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.2E-19	7	73	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.59E-17	8	79	IPR009057	Homeodomain-like
SMART	SM00389	1.1E-12	19	83	IPR001356	Homeobox domain
PROSITE profile	PS50071	16.471	19	79	IPR001356	Homeobox domain
CDD	cd00086	3.88E-14	26	77	No hit	No description
Pfam	PF00046	8.7E-15	27	76	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	54	77	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MDFAYSGDGS SDEASVDTGK KKEQFRRHSA QQIQRLEAFF KTSQHPTKDE KQQLSTELGL 60 SSGQIKFWFQ NKRNQIRLRN EREENDALIV ENEKLRMENL MLGGMLMDPF CTKCHGGLTE 120 EETRKLHLQG LANENAKMKK EVDSSFHVFE LSKILAMESI FFFSI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A068V7D7	1e-118	A0A068V7D7_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13886	8	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73360.1	4e-31	homeodomain GLABROUS 11