PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g02210
Common NameGSCOC_T00007916001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 455aa    MW: 49846.3 Da    PI: 9.4793
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g02210genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.51.8e-16249295455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   hn+ ErrRRdriN+++  L++l+P+a      K +Ka++L +++eY+k+Lq
  Cc00_g02210 249 VHNQSERRRRDRINQKMKALQKLVPNA-----SKTDKASMLDEVIEYLKQLQ 295
                  6*************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-18243304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.79245294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-14249295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.7E-19249303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.55E-16250299No hitNo description
SMARTSM003531.6E-17251300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MSHHFVVPNW NLRHQRQDQL DGGDGNRSSH VQNHQNPSYV VPMLNHEVAE LTWENGQLAM  60
HGLSNILPSP APTKSTCGRA GDHTLESIVH QATCHHKHSR MMNSMQSQKH DDGDKKLSSK  120
INSTLEFSGT KWGERSGQVQ MLPSTMKKRP RSETESDQCG RFFSSKIHDL GQERSACASA  180
SATLCRDNNK DATMVTWASF ESPSSFKTKN TTDEDSASHG GLENRDEEQG AKGGIVQSCS  240
ARRSRAAAVH NQSERRRRDR INQKMKALQK LVPNASKTDK ASMLDEVIEY LKQLQAQVHM  300
MGTRAMPQMM MTPLAMQQQL QMSLLARMGM GAGVGVGMGM GMLDINSMAR TAPLSLQPFM  360
HSTPIASAPP TFVPPPLVMP PRIPACTPPP ATANATTTEI NASGAFSDPY SSFLAQQTVN  420
MDFYSKMAAL FRQQANQTSA TASNPLQPNF NQGK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253258ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027168713.10.0transcription factor PIF7-like isoform X2
TrEMBLA0A068V9P20.0A0A068V9P2_COFCA; Uncharacterized protein
STRINGEOY219711e-148(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54371732
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.13e-39bHLH family protein