PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g02950
Common NameGSCOC_T00004318001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family B3
Protein Properties Length: 345aa    MW: 40100.4 Da    PI: 6.4294
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g02950genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.16.7e-13351141298
                  HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                   +g + +p  f++++g++   ++ ++l+ ++g sW ++l   ++  +++l kGWk+F++   ++e  f+vF++ g+s+f   v +f+
  Cc00_g02950  35 DRG-IKIPTAFMRDYGES--LEQVVVLKVPTGASWPIEL--LQTEFGTWLDKGWKDFAEYYSIRECHFLVFEYCGDSQF--QVIIFD 114
                  334.89*********966..6679***************..999999****************************9999..888887 PP
2B353.64.1e-17248343199
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                  f++ + ps+v+ s+ l ++  fa+++ +k+ ++ ++ l+ ++g + W v++    +  +  +++GW+eFv +n+L +gD++vF+l+++ + f  +v++
  Cc00_g02950 248 FISFMQPSYVTYSCKLFFSPVFAKKY-LKECKHWDMELRVSEGtKIWPVTC--YIYTTKAKIKRGWEEFVLDNNLMVGDVCVFELMKDnRMF--NVTI 340
                  788899********************.34456678888886666*******..77777778************************9964555..9999 PP

                  E-S CS
           B3  97 frk 99 
                  +r+
  Cc00_g02950 341 YRR 343
                  987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-2121116IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-2022116IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.70223116IPR003340B3 DNA binding domain
CDDcd100178.51E-1624114No hitNo description
SMARTSM010198.1E-1226116IPR003340B3 DNA binding domain
PfamPF023621.3E-1027114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-20240343IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-19241344IPR015300DNA-binding pseudobarrel domain
CDDcd100171.75E-21246342No hitNo description
SMARTSM010192.0E-13248344IPR003340B3 DNA binding domain
PROSITE profilePS5086312.449248344IPR003340B3 DNA binding domain
PfamPF023624.6E-15248343IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MATNQRGNNR SLDQALNHQA KKPPHFFKVV LSPMDRGIKI PTAFMRDYGE SLEQVVVLKV  60
PTGASWPIEL LQTEFGTWLD KGWKDFAEYY SIRECHFLVF EYCGDSQFQV IIFDPSASEI  120
EYRLEAPEDH GMHDHKNQPP MRRRRTMFQK SDEVESDDDS FEILGEVSAA ASCHTKQRRK  180
SAQIHEEQDS ESRKNENVNL LDLSAEESSE GVPSTRQSAI AKSETVIDKE KFISYQRAKT  240
FTSENPFFIS FMQPSYVTYS CKLFFSPVFA KKYLKECKHW DMELRVSEGT KIWPVTCYIY  300
TTKAKIKRGW EEFVLDNNLM VGDVCVFELM KDNRMFNVTI YRRN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-2121734418143B3 domain-containing transcription factor VRN1
4i1k_B1e-2121734418143B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027076057.10.0B3 domain-containing transcription factor VRN1-like
TrEMBLA0A068VDY70.0A0A068VDY7_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-42B3 family protein